Rotaxanes shuttles

FIGURE 19.10 (See color insert.) A typical rotaxane shuttle set-up. The macrocycle encircles the thread-like portion of the dumbbell with heavy groups at its ends. The thread has two recognition sites which can be altered reversibly so... 

Bioelectronics is another apphcation area, in which rotaxanes, particularly redox-active rotaxanes, could make a significant impact Enzyme electrodes are altered in these apphcations by direct electron transfer between the electrode surface and the redox enzyme. Electronic communication between the surface and the redox enzyme centers is hindered, because a separation exists. This impediment can be circumvented by aligning the enzyme with the electrode and utilizing the redox relay units as go-betweens. The aforementioned concept has been exploited to associate an apoprotein, apo-gjucose oxidase (apo-GOx), onto relay-functionalized materials including flavin adenine dinucleotide (FAD) monolayers, nanoparticles, and carbon nanotubes [85-88]. Katz etal. used reversible redox-active rotaxane shuttles in the bioelectrocatalyzed oxidation of glucose [80]. 

Another synthetic strategy is based on self-assembly driven by molecular recognition between complementary TT-donors and 7T-acceptors. Examples include the synthesis of catenanes and rotaxanes that can act as controUable molecular shuttles (6,236). The TT-donors in the shuttles are located in the dumb-beU shaped component of the rotaxane and the 7T-acceptors in the macrocycHc component, or vice versa. The shuttles may be switched by chemical, electrochemical, or photochemical means. 

In a recent report [141] Stoddart et al. reported a new class of rotaxanes with dendritic stoppers by using a so-called threading approach (Fig. 25). Alkylation of bipyridinium based units with Frechet s third tier branched aryl ethereal dendron, in the presence of BPP34C10 afforded 58 as one of the products. Variable temperature H-NMR spectroscopy in different NMR solvents helped determine the novel shuttling process of BPP34C10 from one bipyridinium unit to the other in 58. The dendritic framework of 58 assists in its solubility in a wide range of solvents. 

Figure 27 illustrates a rotaxane of Stoddart et al. [93], in which the axle contains two stations interacting with the cyclobis(paraquat-p-phenylene) bead. Its NMR spectrum at room temperature indicated that the bead moves back and forth like a shuttle between the stations about 1800 times a second. Stoddart et al. [94,95] prepared a [2]rotaxane containing two bipyridinium units and a crown, as shown in Fig. 28. The shuttling speed of the bead estimated by...

Figure 12.16 Schematic representation of (a) ring shuttling in rotaxanes and (b)...

Aucagne V, Bema J, Crowley JD, Goldup SM, Hanni KD, Leigh DA, Lusby PJ, Ronaldson VE, Slawin AMZ, Viterisi A, Walker DB (2007) Catalytic active-metal template synthesis of [2]rotaxanes, [3]rotaxanes, and molecular shuttles, and some observations on the mechanism of the Cu(I)-catalyzed azide-alkyne 1, 3-cycloaddition. J Am Chem Soc 129 11950-11963... 

Interestingly, the dumbbell component of a molecular shuttle exerts on the ring motion the same type of directional restriction as imposed by the protein track for linear biomolecular motors (an actin filament for myosin and a microtubule for kinesin and dynein).4 It should also be noted that interlocked molecular architectures are largely present in natural systems—for instance, DNA catenanes and rotaxanes... 

Figure 13.2 Schematic representation of the intercomponent motions that can be obtained with simple interlocked molecular architectures ring shuttling in rotaxanes (a), and ring rotation in rotaxanes (b) and catenanes (c).

If during the template-directed synthesis of a rotaxane, the location of two identical recognition sites ( stations ) within its dumbbell component can be arranged (Fig. 13.3a and b), a degenerate, coconformational equilibrium state is obtained in which the macrocyclic component spontaneously shuttles back and forth between... 

Figure 13.3 (a) Operation of a two-station rotaxane as a degenerate molecular shuttle,... 

Figure 13.4 Structure formulas of (a) the two-station rotaxane 14+ that behaves as a degenerate molecular shuttle and (b) its molecular components 2 and 34 + and model rotaxane 44 +.

An example of rotaxane that behaves as degenerate molecular shuttle is represented... 

Structurally related to these species are the triply branched compound 56+ and its rotaxanes 66+, 76+, and 86+ (Fig. 13.6)9, in which one, two, or three acceptor units are encircled by the electron donor macrocyclic compound 2. Although these rotaxanes cannot behave as degenerate molecular shuttles because of their branched topology, they are nevertheless interesting from the electrochemical viewpoint. 

Figure 13.8 Schematic operation of a two-station rotaxane as a controllable molecular shuttle, and idealized representation of the potential energy of the system as a function of the position of the ring relative to the axle upon switching off and on station A. The number of dots in each position reflects the relative population of the corresponding coconformation in a statistically significant ensemble. Structures (a) and (c) correspond to equilibrium states, whereas (b) and (d) are metastable states. An alternative approach would be to modify station through an external stimulus in order to make it a stronger recognition site compared to station A.

Figure 13.9 Structure formula of rotaxane 9H3+ and representation of its operation as a pH controllable molecular shuttle.

Among the various techniques that can be employed to investigate the ring shuttling between the two stations, the electrochemical ones are very useful, particularly the cyclic voltammetry when it is used for monitoring the behavior of the bipyridinium unit, which is one of the two stations involved in the ring shuttling. In protonated rotaxane 9H3 + (Fig. 13.10), the first and second one-electron reduction... 

As discussed in Section 13.2.2, when a rotaxane contains two different recognition sites in its dumbbell component, it can behave as a controllable molecular shuttle, and, if appropriately designed by incorporating suitable redox units, it can perform its machine-like operation by exploiting electrochemical energy inputs. Of course, in such cases, electrons/holes, besides supplying the energy needed to make the machine work, can also be useful to read the state of the systems by means of the various electrochemical techniques. 

The first example of electrochemically driven molecular shuttles is rotaxane 284+ (Fig. 13.25) constituted by the electron-deficient cyclophane 124+ and a dumbbellshaped component containing two different electron donors, namely, a benzidine and a biphenol moieties, that represent two possible stations for the cyclophane.10 Because benzidine is a better recognition site for 124+ than biphenol, the prevalent isomer is that having the former unit inside the cyclophane. The rotaxane... 

Figure 13.26 Structure formula of rotaxane 294+ and the electrochemically induced shuttling of the cyclophane along the dumbbell-shaped component (CH3CN, 298 K).

After this first report, a remarkable number of electrochemically controllable molecular shuttles have been designed, constructed, and studied. Rotaxane 294+ (Fig. 13.26), for instance, incorporates the electron-deficient cyclophane 124+ and a dumbbell containing two kinds of electron-rich units, namely, one 2,6-dioxyanthra-cene and two 1,4-dioxybenzene moieties.34 In solution, the rotaxane is present as the isomer with the 2,6-dioxyanthracene unit inside the cyclophane, owing to the fact that this unit is a better station in comparison to the 1,4-dioxybenzene recognition sites. 

Figure 13.28 The electrochemically induced shuttling in the benzylic amide rotaxane 30.

Rotaxane 316+ was specifically designed36 to achieve photoinduced ring shuttling in solution,37 but it also behaves as an electrochemically driven molecular shuttle. This compound has a modular structure its ring component is the electron donor macrocycle 2, whereas its dumbbell component is made of several covalently linked units. They are a Ru(II) polypyridine complex (P2+), ap-terpheny 1-type rigid spacer... 

Figure 13.38 The electrochemically driven ring shuttling of rotaxane 434+ incorporated into an Au-SAM.

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