Reaction centers calculated spectroscopy

In this paper selectivity in partial oxidation reactions is related to the manner in which hydrocarbon intermediates (R) are bound to surface metal centers on oxides. When the bonding is through oxygen atoms (M-O-R) selective oxidation products are favored, and when the bonding is directly between metal and hydrocarbon (M-R), total oxidation is preferred. Results are presented for two redox systems ethane oxidation on supported vanadium oxide and propylene oxidation on supported molybdenum oxide. The catalysts and adsorbates are stuped by laser Raman spectroscopy, reaction kinetics, and temperature-programmed reaction. Thermochemical calculations confirm that the M-R intermediates are more stable than the M-O-R intermediates. The longer surface residence time of the M-R complexes, coupled to their lack of ready decomposition pathways, is responsible for their total oxidation. 

The next two chapters are devoted to ultrafast radiationless transitions. In Chapter 5, the generalized linear response theory is used to treat the non-equilibrium dynamics of molecular systems. This method, based on the density matrix method, can also be used to calculate the transient spectroscopic signals that are often monitored experimentally. As an application of the method, the authors present the study of the interfadal photo-induced electron transfer in dye-sensitized solar cell as observed by transient absorption spectroscopy. Chapter 6 uses the density matrix method to discuss important processes that occur in the bacterial photosynthetic reaction center, which has congested electronic structure within 200-1500cm 1 and weak interactions between these electronic states. Therefore, this biological system is an ideal system to examine theoretical models (memory effect, coherence effect, vibrational relaxation, etc.) and techniques (generalized linear response theory, Forster-Dexter theory, Marcus theory, internal conversion theory, etc.) for treating ultrafast radiationless transition phenomena. 

Fig. 10. (A) and (B) Two models for the electron-transfer sequence in bacterial reaction centers. (C) Population densities of various intermediary states as a function of time calculated according to the model shown in (B). See text for discussion. Figure source (A) and (8) Holzapfel, Finkele, Kaiser, Oesterheldt, Scheer, Stilz and Zinth (1989) Observation of a bacteriochlorophyll anion radical during the primary charge separation in reaction center. Chem Phys Lett 160 5 (C) S Schmidt, T Arit, P Hamm, H Huber, T NSggle, J WachtveitI, M Meyer, H Scheer and W Zinth (1994) Energetics of the primary electron transfer reaction reveaied by ultrafast spectroscopy on modified bacterial reaction centers. Chem Phys Lett 223 118.

Table IV The calculated Spectroscopy of the Reaction Center from R, viridis. Energy in 1000 cm. and dipole moment differences A iin Debye.

The initial adsorption of the oxime in zeolites was studied through a combination of solid-state NMR spectroscopy and theoretical calculations ". The calculated adsorption complexes formed over silanol groups and complexes over Brpnsted acid sites in zeolites are depicted. This study suggests that the A-protonated oxime is formed over Brpnsted acid centers, but not over weakly acidic silanol groups. It has been also suggested that weakly acidic or neutral silanol groups or silanol nests are active catalysts of the rearrangement reaction ... 

The molecular and electronic structures of cyclic disulfide cation radicals of 1,2-dithietane 6 and 1,2-dithiete 7, and radical cations of 1,2-dithiolane 2 (2a-c represent stable conformations determined in terms of the symmetry restriction of Cs, Cz, and Czv), with emphasis on the nature of a two-center three-electron (Zc-ie) sulfur-sulfur bond have been examined by ab initio molecular orbital (MO) calculations <1997JMT(418)171>. Unrestricted Hartree-Fock (UHF)/ MIDI-4(d) computations showed that this bond in organodisulfide radical cation 2 is shorter in comparison to 1,2-dithiolane 2 and possesses partial Jt-bond character (structure A), as previously implied by electron spin resonance (ESR) spectroscopy <1982JA2318>, which correlates best with the form as the most favorable conformation of the cation radical 2. Contrary to the repulsive S-S interaction in the parent 1,2-dithiolane arising from the lone pairs of electrons, the hemi-7t-bond formed by one-electron oxidation should stabilize the five-membered ring of 2, or, for example, a similar cation radical of LA 3 which is involved in diverse biochemical reactions. 

The mechanistic details for the combustion of CO on supported gold clusters are discussed next. Small gold clusters, Au (n < 20) were deposited after size-selection from the gas phase onto defect-poor and defect-rich MgO(lOO) films. As described in Sect. 1.5.1, defect-rich films are characterized by a given density ( 5% ML) of extended defects and point defects (F centers), whereas for defect-poor films the density of F-centers is negligible. The CO-oxidation was studied by combined temperature programmed reaction (TPR) and Fourier transform infrared spectroscopy and the obtained results were compared to extensive ab initio calculations [209,368,369]. 

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