Pyrimidines radical alkylation

There are examples in which base radicals undergo reaction with adjacent base residues. The 5-(2 -deoxyuridinyl)methyl radical (63, Scheme 8.30) can forge an intrastrand cross-link with adjacent purine residues. Cross-link formation is favored with a guanine residue on the 5 -side of the pyrimidine radical and occurs under low-oxygen conditions. A mechanism was not proposed for this process, but presumably the reaction involves addition of the nucleobase alkyl radical to the C8-position of the adjacent purine residue. Molecular oxygen likely inhibits crosslink formation by trapping the radical 63, as shown in Scheme 8.24. The radical intermediate 89 must undergo oxidation to yield the final cross-linked product 90,... 

In contrast to OH and H that are electrophilic radicals, alkyl radicals are nucleophilic and their preference of addition to the pyrimidines is reversed (preferred addition at C6). The rate of reaction is several orders of magnitude lower than that of OH and H. In the case of purines that are more readily protonated than the pyrimidines, the effect of protonation could be studied. Protonation lowers the electron density, and thus the rate of reaction of the nucleophilic alkyl radicals goes up markedly upon protonation. ... 

Olefins could also be used as reactants in these radical alkylations, and the resulting products such as 8 are similarly converted to suitable derivatives. Other variously substituted pyridines, pyrimidines, and pyrazines could be alkylated, in some cases giving mixtures which were separated to give additional subjects for our study. 

Pyrido[3,4-d]pyrimidine-2,4-dione synthesis, 3, 215 Pyridopyrimidines, 3, 201 iV-alkylations, 3, 206 biological activity, 3, 260-261 1-electron reductions, 3, 207 IR spectra, 3, 204 mass spectra, 3, 204 MO calculations, 3, 204 NMR, 3, 202, 203 nucleophilic substitution, 3, 213 8-nucleosides synthesis, 3, 206 physical properties, 3, 201-205 protonation, 3, 206 radical reactions, 3, 215 reactions with water, 3, 207 reduced... 

Deprotonation provides the necessary electron push to kick out the electron pair joining C(6) with the nitrobenzene oxygen. If, however, N(l) is alkylated (as with the nucleosides and nucleotides), OH catalysis is much less efficient since it now proceeds by deprotonation from N(3) (with the uracils) or from the amino group at C(4) (with the cytosines). In these cases the area of deprotonation is separated from the reaction site by a (hydroxy)methylene group which means that the increase in electron density that results from deprotonation at N(3) is transferable to the reaction site only through the carbon skeleton (inductive effect), which is of course inefficient as compared to the electron-pair donation from N(l) (mesomeric effect) [26]. Reaction 15 is a 1 1 model for the catalytic effect of OH on the heterolysis of peroxyl radicals from pyrimidine-6-yl radicals (see Sect. 2.4). 

Aminopyrazolo[3,4-d]pyrimidines 257 were converted into the corresponding 4-aryl substituted derivatives 259 via treatment with alkyl nitrites and boiling in aromatic solvent. The isomer distribution of 259 prepared by these route was that predicted for a radical intermediate (ortho, meta, and para). The structure of isomers was established by H-NMR. Unusual fragmentation products were isolated these probably result from collapse of the radical intermediate 258 (83JOC4605). Methylation of 257 takes place at either N-1 or N-2. Further methylation affords methylamino derivatives structures of the products were established by C-NMR as well as by chemical methods (75JOC1822). 

It will be shown below that alkyl radicals add predominantly at the C(6)-positions of the pyrimidines and, when products as shown above are found after OH-attack in very complex systems such as nucleohistones (e.g., Gajewski et al. 1988 Dizdaroglu and Gajewski 1989 Dizdaroglu et al. 1989 Gajewski and Dizd-aroglu 1990) or Thy dimers in polydeoxythymidylic acid (Karam et al. 1986), it cannot be fully excluded that they are formed via the trivial two-radical recombination mechanism. 

The formation of purine 5, 8-cyclonucleosides and -cyclonucleotides and pyrimidine 5, 6-cyclco-nucleosides are a typical product of an oxidation at C(5 ). Because it involves an addition of an alkyl radical to the base moiety, this reaction has already been discussed in Section 5.3.1. The dAdo C(5 ) radical was generated specifically by reacting 8BrdAdo with eaq. The ensuing reactions are discussed in Section 7.2. 

Alkenes, perfluoro-cycloadditions to benzyl azide, 60, 35 pyridine imines and ylids, 60, 36 Alkenes, perfluoro-, as heterocyclic precursors, 59, 10 Alkylation, free-radical, of 1,3-dimethyluracil, 55, 227 A-Alkylation, [ 1,2,4]triazolo[ 1,5-u)-pyrimidines, 57, 110 Alkynes, photocycloaddition to uracils, rearrangement with HCNO elimination, 55, 149 Alkynes, ethoxy-, cyclaoddition to hexafluoroacetone azine, 60, 32 Alkynes, perfluoro-, as heterocyclic precursors, 59, 10 Allenes... 

Purpose. DNA adducts are nucleotide bases (i.e., purines and pyrimidines) that have been covalently modified by reactive electrophilic chemical intermediates or free radicals. The chemical structures of DNA adducts are diverse and vary from simple alkyl adducts induced by alkylating agents to complex bulky adducts such as those resulting from metabolic activation of polycyclic aromatic hydrocarbons, aromatic amines, and aflatoxins (Dipple 1995 Chiarelli and Jackson 1992 Rundle 2006 Xue and Warshawsky 2005). The purpose of measuring DNA adducts is to determine whether a DNA-reactive compound or a metabolically activated... 

In pyrimidines, a 4-alkyl- is deprotonated more readily than a 2-aUcyl-gronp here again one sees the greater stability associated with a y-qninonoid resonating anion. Side-chain radical halogenation selects a pyrimidine-5-methyl over a pyrimidine-4-methyl the reverse selectivity can be achieved by halogenation in acid solntion - presnmably an iV-protonated, side-chain-deprotonated species, i.e. the enamine tantomer, is involved. ... 

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