Proton using tautomers

It should be noted that no emission from the zwitterionic form of the proton-transferred tautomer was observed from any of the benzotriazoles studied in the present work. This implies that non-radiative relaxation processes from the excited state of this species are very efficient in all of the solvent and polymer environments studied. Thus no information is available on the effect of the medium polarity on the room-temperature photophysics of the zwitterionic form using fluorescence techniques. 

In the final exploration of the quantum chemistry unit students use a computational chemistry package (eg. Spartan, Gaussian, CaChe, etc.) to calculate the ground state energies, molecular orbitals, and in some cases the excited state energies, of two proton transfer tautomers. Calculations are performed at several different levels of theory, and use both semi-empirical and ab initio methods. Several different basis sets are compared in the ab initio calculations. The students use the results of these calculations to estimate the likelihood of excited state proton transfer. The calculations require CPU time ranging from a couple of minutes to a couple of hours on the PCs available to the students in the laboratory. 

Orientation and size of the isolated NA bases (a) guanine, (b) N7 protonated guanine tautomer, (c) adenine, (d) cytosine, (e) thymine, (f) uracil. Standard atom numbering is used (e.g., textbook of Saenger 1983)... 

A parallel exists between the results of protonation and alkylation of pyrazolones since there is an alkyl derivative for each tautomer. The main difference is that the percentage of the different tautomers is thermodynamically controlled whereas that of alkyl derivatives is kinetically controlled. One has to remember that the alkyl derivatives thus obtained are the fixed compounds used in tautomeric studies. 

A large number of Brpnsted and Lewis acid catalysts have been employed in the Fischer indole synthesis. Only a few have been found to be sufficiently useful for general use. It is worth noting that some Fischer indolizations are unsuccessful simply due to the sensitivity of the reaction intermediates or products under acidic conditions. In many such cases the thermal indolization process may be of use if the reaction intermediates or products are thermally stable (vide infra). If the products (intermediates) are labile to either thermal or acidic conditions, the use of pyridine chloride in pyridine or biphasic conditions are employed. The general mechanism for the acid catalyzed reaction is believed to be facilitated by the equilibrium between the aryl-hydrazone 13 (R = FF or Lewis acid) and the ene-hydrazine tautomer 14, presumably stabilizing the latter intermediate 14 by either protonation or complex formation (i.e. Lewis acid) at the more basic nitrogen atom (i.e. the 2-nitrogen atom in the arylhydrazone) is important. 

It has been proposed that protonation or complex formation at the 2-nitrogen atom of 14 would enhance the polarization of the r,6 -7i system and facilitate the rearrangement leading to new C-C bond formation. The equilibrium between the arylhydrazone and its ene-hydrazine tautomer is continuously promoted to the right by the irreversible rearomatization in stage II of the process. The indolization of arylhydrazones on heating in the presence of (or absence of) solvent under non-catalytic conditions can be rationalized by the formation of the transient intermediate 14 (R = H). Under these thermal conditions, the equilibrium is continuously pushed to the right in favor of indole formation. Some commonly used catalysts in this process are summarized in Table 3.4.1. 

Since the domain explored will always be a very small part of the possible cases of tautomerism, it is essential to have general rules for families of compounds, substituents, and solvents. This chemical approach is maintained in this chapter, although the importance of the calculations is recognized. The following discussion begins with calculation of tautomeric equilibrium constants, followed by the combined use of theoretical calculations and experimental results (an increasingly expanding field) and ends with the calculations of the mechanisms of proton transfer between tautomers. 

This technique provides quantitative information about tautomeric equilibria in the gas phase. The results are often complementary to those obtained by mass spectrometry (Section VII,E). In principle, gas-phase proton affinities, as determined by ICR, should provide quantitative data on tautomeric equilibria. The problem is the need to correct the measured values for the model compounds, generally methyl derivatives, by the so-called N-, 0-, or S-methylation effect. Since the difference in stability between tautomers is generally not too large (otherwise determination of the most stable tautomer is trivial) and since the methylation effects are difficult to calculate, the result is that proton affinity measurements allow only semi-quantitative estimates of individual tautomer stabilities. This is a problem similar to but more severe than that encountered in the method using solution basicities (76AHCS1, p. 20). 

Katritzky and Taft were the first to use ICR proton affinities for tautomeric studies (76JA6048). This and work of Katritzky and Nibbering (77TL1777) discuss the tautomerism of pyridones and thiopyridones and conclude that ICR results are in agreement with previous studies of Beak (76JA171)—that in the gas phase the OH and SH tautomers predominate. The complicated case of 2-thiouracil (six aromatic tautomers) was studied by Katritzky and Eyler [89JCS(P2)1499] they conclude that the oxothioxo tautomer is the most stable. 

Dipole moments and total energies for pyrazolo[l,5-h]-s-triazole tautomeric forms 97a-97c were calculated using CNDO/2 and CNDO/S (76T341) the results predict the stability of tautomers in a 97a > 97b > 97c sequence. So far, no ab initio calculations or synthesis of 97 have been reported. For pyrazolo[3,2-c]-s-triazole 98 (76T341), the calculated dipole moments, electronic absorption, and proton chemical shifts are in a good... 

One element of database generation that is a key consideration is whether to expand the representative compounds to include alternative tautomers, protonated and deprotonated forms of the molecule, and also to enumerate stereochemistry fully if not specified in the input. Depending on the molecules in question and the options considered, these can lead to a 10-fold increase in the size of the database to be explored. However, such an expansion is necessary if methods are used that are sensitive to such chemical precision (e.g., docking). For 3D similarity searching, it is sometimes more efficient to consider various modifications to the query, leading to multiple searches against a smaller database. 

Figure 10-4. The double- and single-site titration models for His and Asp groups [42]. (A) In the double site model, only one X is used for describing the equilibrium between the protonated and deprotonated forms, while the tautomer interversion process is represented by the variable x. (B) In the single-site model, protonation at different sites is represented by different X variables. HSP refers to the doubly protonated form of histidine. HSD and HSE refer to the singly protonated histidine with a proton on the h and e nitrogens, respectively. ASP1 and ASP2 refer to the protonated carboxylic acid with a proton on either of the carboxlate oxygens...

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