Protein oxidation biological functions

Type 1 copper proteins are the class of proteins for which cupredoxins were originally named. Type 1 copper proteins include both proteins with known electron transfer function (e.g., plastocyanin and rusticyanin), and proteins whose biological functions have not been determined conclusively (e.g., stellacyanin and plantacyanin). Although these proteins with unknown function cannot be called cupredoxins by the strict functional definition, they have been classified as cupredoxins because they share the same overall structural fold and metal-binding sites as cupredoxins. In addition, many multidomain proteins, such as laccase, ascorbate oxidase, and ceruloplasmin, contain multiple metal centers, one of which is a type 1 copper. Those cupredoxin centers are also included here. Finally, both the Cua center in cytochrome c oxidase (CcO) and nitrous oxide reductase (N2OR), and the red copper center in nitrocyanin will be discussed in this chapter because their metal centers are structurally related to the type 1 copper center and the protein domain that contains both centers share the same overall structural motif as those of cupredoxins. The Cua center also functions as an electron transfer agent. Like ferredoxins, which contain either dinuclear or tetranuclear iron-sulfur centers, cupredoxins may include either the mononuclear or the dinuclear copper center in their metal-binding sites. 

The multi-copper oxidases include laccase, ceruloplasmin, and ascorbate oxidase. Laccase can be found in tree sap and in fungi ascorbate oxidase, in cucumber and related plants and ceruloplasmin, in vertebrate blood serum. Laccases catalyze oxidation of phenolic compounds to radicals with a concomitant 4e reduction of O2 to water, and it is thought that this process may be important in the breakdown of lignin. Ceruloplasmin, whose real biological function is either quite varied or unknown, also catalyzes oxidation of a variety of substrates, again via a 4e reduction of O2 to water. Ferroxidase activity has been demonstrated for it, as has SOD activity. Ascorbate oxidase catalyzes the oxidation of ascorbate, again via a 4e reduction of O2 to water. Excellent reviews of these three systems can be found in Volume 111 of Copper Proteins and Copper Enzymes (Lontie, 1984). 

Flavin coenzymes are usually bound tightly to proteins and cycle between reduced and oxidized states while attached to the same protein molecule. In a free unbound coenzyme the redox potential is determined by the structures of the oxidized and reduced forms of the couple. Both riboflavin and the pyridine nucleotides contain aromatic ring systems that are stabilized by resonance. Part of this resonance stabilization is lost upon reduction. The value of E° depends in part upon the varying amounts of resonance in the oxidized and reduced forms. The structures of the coenzymes have apparently evolved to provide values of E° appropriate for their biological functions. 

Aconitase was the first protein to be identified as containing a catalytic iron-sulfur cluster [24-26]. It was also readily established that the redox properties of the [4Fe-4S](2+ 1+) cluster do not play a role of significance in biological functioning the 1 + oxidation state has some 30% of the activity of the 2+ state [25], Since then several other enzymes have been identified or proposed to be nonredox iron-sulfur catalysts. They are listed in Table 2. It appears that all are involved in stereospecific hydration reactions. However, these proteins are considerably less well characterized than aconitase. In particular, no crystal structural information is available yet. Therefore, later we summarize structural and mechanistic information on aconitase, noting that many of the basic principles are expected to be relevant to the other enzymes of Table 2. 

Recent years have witnessed increasing interest in the biology, chemistry, and physics of electron-transferring non-heme iron proteins. This class of protein serves as an oxidation-reduction component in various biological functions involved in anaerobic fermentative metabolism, photosynthesis, and hydroxylation reactions. 

The properties of a particular iron porphyrin are controlled in several different ways—by variation in the nature and position of porphyrin ring substituents, the number and nature of axial ligands, and the spin state and oxidation state of the metal ion. Not least, the protein itself in the natural systems plays a major role in the tailoring of the properties of the prosthetic group for the particular biological function it is to perform. 

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