Potential functions harmonic interaction

The first two terms on the right-hand side of Eq. (83) are usually assumed to be harmonic, as given for example by Eq. (6-74). The third term is often developed in a Fourier series, as given by Eq. (82). The potential function appropriate to the interaction between nonbonded atoms is taken to be of the Lennard-Jones type (Section 6.7.3). In all of these cases the necessary force constants are estimated by comparing the results obtained from a large number of similar molecules. If electrostatic interactions are to be considered, effective atomic charges must be suggested and Coulomb s law applied directly [see Eq. (6-81)]. 

The full description of the interactions in the system that are included in the simulations is called the force field. A typical potential function of the system features extremely simplified forms (for example, harmonic terms) for the various contributions ... 

Recently, detailed molecular pictures of the interfacial structure on the time and distance scales of the ion-crossing event, as well as of ion transfer dynamics, have been provided by Benjamin s molecular dynamics computer simulations [71, 75, 128, 136]. The system studied [71, 75, 136] included 343 water molecules and 108 1,2-dichloroethane molecules, which were separately equilibrated in two liquid slabs, and then brought into contact to form a box about 4 nm long and of cross-section 2.17 nmx2.17 nm. In a previous study [128], the dynamics of ion transfer were studied in a system including 256 polar and 256 nonpolar diatomic molecules. Solvent-solvent and ion-solvent interactions were described with standard potential functions, comprising coulombic and Lennard-Jones 6-12 pairwise potentials for electrostatic and nonbonded interactions, respectively. While in the first study [128] the intramolecular bond vibration of both polar and nonpolar solvent molecules was modeled as a harmonic oscillator, the next studies [71,75,136] used a more advanced model [137] for water and a four-atom model, with a united atom for each of two... 

The potential function V still must be made explicit in order to complete the description of the system. A general multipole expansion in terms of first, second rank, etcetera interactions depending only on the relative orientation between each pair of bodies can be taken, as well as a multipole-field term (e.g., a dipole-field) for the pairwise interaction between each body and field. Finally each stochastic field is subjected to a harmonic potential, to parametrize in the most economical way the amplitude of the stochastic fluctuations. The complete potential is then... 

The relationship between the potential function K(R) and the observable spectroscopic parameters is summarized in Figure 2. The harmonic vibration frequencies are obtained as the eigenvalues of a secular determinant involving the quadratic force constants and the atomic masses and molecular geometry (the F and G matrices of Wilson s well-known formalism) by a calculational procedure discussed in detail by Wilson, Decius, and Cross.1 The eigenvectors determine the normal coordinates Q in terms of which the kinetic and quadratic potential energy terms are both diagonal (R = LQ). The various anharmonidty constants and vibration/rotation interaction constants are obtained in terms of the... 

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