Potential energy surfaces molecular systems

The full dynamical treatment of electrons and nuclei together in a laboratory system of coordinates is computationally intensive and difficult. However, the availability of multiprocessor computers and detailed attention to the development of efficient software, such as ENDyne, which can be maintained and debugged continually when new features are added, make END a viable alternative among methods for the study of molecular processes. Eurthemiore, when the application of END is compared to the total effort of accurate determination of relevant potential energy surfaces and nonadiabatic coupling terms, faithful analytical fitting and interpolation of the common pointwise representation of surfaces and coupling terms, and the solution of the coupled dynamical equations in a suitable internal coordinates, the computational effort of END is competitive. 

In this chapter, we look at the techniques known as direct, or on-the-fly, molecular dynamics and their application to non-adiabatic processes in photochemistry. In contrast to standard techniques that require a predefined potential energy surface (PES) over which the nuclei move, the PES is provided here by explicit evaluation of the electronic wave function for the states of interest. This makes the method very general and powerful, particularly for the study of polyatomic systems where the calculation of a multidimensional potential function is an impossible task. For a recent review of standard non-adiabatic dynamics methods using analytical PES functions see [1]. 

The full quantum mechanical study of nuclear dynamics in molecules has received considerable attention in recent years. An important example of such developments is the work carried out on the prototypical systems H3 [1-5] and its isotopic variant HD2 [5-8], Li3 [9-12], Na3 [13,14], and HO2 [15-18], In particular, for the alkali metal trimers, the possibility of a conical intersection between the two lowest doublet potential energy surfaces introduces a complication that makes their theoretical study fairly challenging. Thus, alkali metal trimers have recently emerged as ideal systems to study molecular vibronic dynamics, especially the so-called geometric phase (GP) effect [13,19,20] (often referred to as the molecular Aharonov-Bohm effect [19] or Berry s phase effect [21]) for further discussion on this topic see [22-25], and references cited therein. The same features also turn out to be present in the case of HO2, and their exact treatment assumes even further complexity [18],... 

Geometry optimizations usually attempt to locate minima on the potential energy surface, thereby predicting equilibrium structures of molecular systems. Optimizations can also locate transition structures. However, in this chapter we will focus primarily on optimizing to minima. Optimizations to minima are also called minimizations. 

An IRC calculation examines the reaction path leading down from a transition structure on a potential energy surface. Such a calculation starts at the saddle point and follows the path in both directions from the transition state, optimizing the geometry of the molecular system at each point along the path. In this way, an IRC calculation definitively connects two minima on the potential energy surface by a path which passes through the transition state between them. 

Iti Chapter 1, we dealt at length with molecular mechanics. MM is a classical model where atoms are treated as composite but interacting particles. In the MM model, we assume a simple mutual potential energy for the particles making up a molecular system, and then look for stationary points on the potential energy surface. Minima correspond to equilibrium structures. 

On the potential energy surfaces thus obtained 2D wavepacket dynamics calculations have been performed in the diabatic state representation. The reduced massses are regarded as those of CH2-ethylene system. The validity was examined by using on-the-fly ab initio molecular dynamics that were supplementarily performed. The dynamics calculations performed are composed of the following steps ... 

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