Polysaccharides ordered molecules

The property of conformational restriction in polysaccharides make them candidates for being the initial self-ordering molecules of prebiotic evolution. This same property in the complex carbohydrate moiety of glycoproteins is the basis of carbohydrate-mediated information transfer through cell surface oligosaccharides interacting with each other or with lectin-like proteins in cell-cell recognition processes. 

It has been estimated that >90% of the carbohydrate mass in nature is in the form of polysaccharides. In living organisms, carbohydrates play important roles. In terms of mass, the greatest amounts by far are stmctural components and food reserve materials, in that order and both in plants. However, carbohydrate molecules also serve as stmctural and energy storage substances in animals and serve a variety of other essential roles in both plants and animals. 

FIGURE 1.10 The sequence of monomeric units in a biological polymer has the potential to contain information if the diversity and order of the units are not overly simple or repetitive. Nucleic acids and proteins are information-rich molecules polysaccharides are not. 

X-Ray diffraction analysis of oriented polysaccharide fibers has had a long history. Marchessault and Sarko discussed this topic in Volume 22 of Advances, and a series of articles by Sundararajan and Marchessault in Volumes 33, 35, 36, and 40 surveyed ongoing developments. The comprehensive account presented here by Chandrasekaran (West Lafayette, Indiana) deals with some 50 polysaccharides, constituting a wide range of structural types, where accurate data and reliable interpretations are available. The regular helical structures of the polysaccharide chains, and associated cations and ordered water molecules, are presented in each instance as stereo drawings and discussed in relation to observed functional properties of the polymers. 

The main component of E. coli—as in all cells—is water (70%). The other components are macromolecules (proteins, nucleic acids, polysaccharides), small organic molecules, and inorganic ions. The majority of the macromolecules are proteins, which represent ca. 55% of the dry mass of the cell. When a number of assumptions are made about the distribution and size (average mass 40 kDa) of proteins, it can be estimated that there are approximately 250000 protein molecules in the cytoplasm of an E. coli cell. In eukaryotic cells, which are about a thousand times larger, it is estimated that the number of protein molecules is in the order of several billion. 

Beta-lactam antibiotics must pass through the outer layer of the cell in order to get the desired PBP to the surface of the membrane. In Gram-positive bacteria, the cell membrane is the only layer covering the cytoplasmic membrane. In a few types of this bacteria, there is a polysaccharide capsule on the outer side of the cell membrane. However, not one of the described structures can serve as a barrier for the diffusion of small molecules such as beta-lactams. Therefore, the idea that the cause of possible resistance is the inability of beta-lactam antibiotics to get the desired PBP is not likely to be a possible mechanism of resistance for Gram-positive bacteria. 

Synthesis. The synthases are present at the endomembrane system of the cell and have been isolated on membrane fractions prepared from the cells (5,6). The nucleoside diphosphate sugars which are used by the synthases are formed in the cytoplasm, and usually the epimerases and the other enzymes (e.g., dehydrogenases and decarboxylases) which interconvert them are also soluble and probably occur in the cytoplasm (14). Nevertheless some epimerases are membrane bound and this may be important for the regulation of the synthases which use the different epimers in a heteropolysaccharide. This is especially significant because the availability of the donor compounds at the site of the transglycosylases (the synthases) is of obvious importance for control of the synthesis. The synthases are located at the lumen side of the membrane and the nucleoside diphosphate sugars must therefore cross the membrane in order to take part in the reaction. Modulation of this transport mechanism is an obvious point for the control not only for the rate of synthesis but for the type of synthesis which occurs in the particular lumen of the membrane system. Obviously the synthase cannot function unless the donor molecule is transported to its active site and the transporters may only be present at certain regions within the endomembrane system. It has been observed that when intact cells are fed radioactive monosaccharides which will form and label polysaccharides, these cannot always be found at all the membrane sites within the cell where the synthase activities are known to occur (15). A possible reason for this difference may be the selection of precursors by the transport mechanism. 

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