Polynucleotides separation

D. W. Togami, Method for performing polynucleotide separations using liquid chromatography, U. S. Pat. 6 017 457, 2000. 

The contents of each tube are then subjected to electrophoresis m separate lanes on the same sheet of polyacrylamide gel and the DNAs located by autoradiography A typical electrophoresis gel of a DNA fragment containing 50 nucleotides will exhibit a pattern of 50 bands distributed among the four lanes with no overlaps Each band cor responds to a polynucleotide that is one nucleotide longer than the one that precedes it (which may be m a different lane) One then simply reads the nucleotide sequence according to the lane m which each succeeding band appears... 

The nucleotide bases are flat molecules. Each base pair is parallel to the one below it, with 340 picometers separating the two. There is a rotation of 36° between pairs, giving ten base pairs per complete turn of the helix. The two sugar-phosphate backbone strands wind around these stacked pairs, as shown in Figure 13-29. The two strands of DNA run in opposite directions, with the terminal phosphate end of one polynucleotide matched with the free hydroxyl end of the other. 

It would be easier to describe those classes of compounds not normally separated by RPLC than to catalogue the applications to which RPLC has been turned. Applications for reversed phase can be found in virtually every area of analysis and are reviewed regularly in the journal Analytical Chemistry. RPLC has not been in general use for the analysis of inorganic ions, which are readily separated by ion exchange chromatography polysaccharides, which tend to be too hydrophilic to separate by RPLC polynucleotides, which tend to adsorb irreversibly to the reversed phase packing and compounds which are so hydrophobic that reversed phase offers little selectivity. 

Murphy, R.E. (2001). Comprehensive two-dimensional liquid chromatography for comparative protein analysis. Presented at the International Symposium on the Separation of Proteins, Peptides and Polynucleotides. (ISPPP 2001) Orlando, FL. 

Branovic K, Forcic D, Santak M, Kosutic-Gulija T, Zgorelec R, Mazuran R, Trescec A, Benko B (2000) Poster P 023 presented at the 20th International Symposium on the Separation and Analysis of Proteins, Peptides, and Polynucleotides - ISPPP 2000, Ljubljana, Slovenia... 

Separation and Quantitation.—The specific radioactivity of [y-32P]ATP of very high activity (up to 240 Ci per millimole) may be measured by using it to phosphorylate [dT(pT)10] quantitatively, using polynucleotide kinase, isolating the labelled undecanucleotide, and measuring its activity.170 Isotope dilution is used to confirm the values. An alternative method of measuring specific radioactivities of ribo-nucleoside triphosphates utilizes a 3H-labelled nucleoside triphosphate (e.g. UTP) of unknown specific activity, a 14C-labelled nucleoside (e.g. ATP), a suitable primer in... 

The subject of the incorporation of anticancer agents into macromolecules [13] and other compounds [336] has been reviewed. A number of purine analogues are incorporated into nucleic acid, but the incorporation of these compounds requires that they be anabolized to nucleoside mono-, di-, and triphosphates, and it is difficult to separate the metabolic effects of the nucleoside phosphates from the metabolic effects of the fraudulent polynucleotides. 

As discussed by Pdrschke one can distinguish several basic features of helix-coil transitions in polynucleotides. Formation of a helix from separated complementary... 

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