Orotidine decarboxylase

Enzymes demonstrate both high specificities and significant reaction rate accelerations. The relative values of enzymic over non-enzymic reactions may be from 10 ° to 10 (orotidine decarboxylase) and the turnover numbers range from one catalytic event per minute to 10 per second (hydration of CO2 to HC03 by carbonic anhydrase). The molecular entities of enzymes cover proteins, ribozymes and catalytic antibodies. 

Orotidine Monophosphate Decarboxylase Volume Editors Lee, J.K., TantiUo, D.J. 

Computational studies of alkene oxidation reactions by metal-oxo compounds, 38, 131 Computational studies on the mechanism of orotidine monophosphate decarboxylase,... 

Orbital interactions and long-range electron transfer, 38, 1 Organic materials for second-order non-linear optics, 32, 121 Organic reactivity, electron-transfer paradigm for, 35, 193 Organic reactivity, structure determination of, 35, 67 Orotidine monophosphate decarboxylase, the mechanism of, 38, 183... 

PRTase - phosphoribosyl transferase ODCase - OMP decarboxylase OMP - orotidine 5 -phosphate... 

Houk KN, Tantillo DJ, Stanton C, Hu Y (2004) What have Theory and Crystallography Revealed About the Mechanism of Catalysis by Orotidine Monophosphate Decarboxylase 238 1-22 Houseman BT, Mrksich M (2002) Model Systems for Studying Polyvalent Carbohydrate Binding Interactions. 218 1-44 Hricoviniovd Z, see Petrus L (2001) 215 15-41 Hu Y, see Houk KN (2004) 238 1-22... 

Michalski J, Dabkowski W (2003) State of the Art. Chemical Synthesis of Biophosphates and Their Analogues via P Derivatives. 232 93-144 Miller BG (2004) Insight into the Catalytic Mechanism of Orotidine 5 -Phosphate Decarboxylase fi"om Crystallography and Mutagenesis. 238 43-62 Mikolajezyk M, Balczewski P (2003) Phosphonate Chemistry and Reagents in the Synthesis of Biologically Active and Natural Products. 223 161-214 Mikolajezyk M, see Drabowicz J (2000) 208 143-176... 

Wu N, Pai EP (2004) Crystallographic Studies of Native and Mutant Orotidine 5 -Phosphate Decarboxylases. 238 23-42... 

In the case of orotic acid, nonenzymatic decarboxylation proceeds with a half-time (ti/2) of about 2.45 X 10 s near pH 7 at room temperature, as indicated by reactions in quartz tubes at elevated temperatures Orotidine 5 -phosphate decarboxylase thus appears to be an extremely proficient enzyme which enhances the reaction rate by a factor of 10 . They estimate the transition state form of the substrate has a dissociation constant that is less than 5 x 10 M. 

This enzyme [EC 4.1.1.23], also known as orotidine-5 -phosphate decarboxylase, catalyzes the conversion of orotidine 5 -phosphate to UMP and carbon dioxide. 

OROTIDYLATE DECARBOXYLASE Orotidine-5 -phosphate decarboxylase, OROTIDYLATE DECARBOXYLASE Orotidine-5 -phosphate pyrophosphorylase,... 

Orotidine monophosphate decarboxylase seems to be a reigning champion of catalytic rate enhancement by an enzyme. 

Low activities of orotidine phosphate decarboxylase and orotate phosphoribosyltransferase result in abnormal growth, megaloblastic anemia and the excretion of large amounts of orotate in the urine. 

Orotidine 5 -phosphate undergoes an unusual decarboxylation (Fig. 25-14, step/), which apparently is not assisted by any coenzyme or metal ion but is enhanced over the spontaneous decarboxylation rate 1017-fold. No covalent bond formation with the enzyme has been detected.268 It has been suggested that the enzyme stabilizes a dipolar ionic tautomer of the substrate. Decarboxylation to form an intermediate ylid would be assisted by the adjacent positive charge.269,270 Alternatively, a concerted mechanism may be assisted by a nearby lysine side chain.270a d Hereditary absence of this decarboxylase is one cause of orotic aciduria. Treatment with uridine is of some value.271... 

The catalytic power of enzymes is awesome (Table 2.1). A most spectacular example is that of the decarboxylation of orotic acid. It spontaneously decarboxy-lates with tm of 78 million years at room temperature in neutral aqueous solution. Orotidine 5 -phosphate decarboxylase enhances the rate of decarboxylation enzyme-bound substrate by 1017 fold. The classical challenge is to explain the magnitude of the rate enhancements in Table 2.1. We will not ask why enzymatic reactions are so fast but instead examine why the uncatalyzed reactions are so slow, and how they can be speeded up. 

In the third step, the pyrimidine ring is closed by dihy-droorotase to form 1-dihydroorotate. Dihydroorotate is then oxidized to orotate by dihydroorotate dehydrogenase. This flavoprotein in some organisms contains FMN and in others both FMN and FAD. It also contains nonheme iron and sulfur. In eukaryotes it is a lipoprotein associated with the inner membrane of the mitochondria. In the final two steps of the pathway, orotate phosphoribosyltransferase yields orotidine-5 -phosphate (OMP), and a specific decarboxylase then produces UMP. 

Low activities of orotidine phosphate decarboxylase and (usually) orotate phosphoribosyltransferase are associated with a genetic disease in children that is characterized by abnormal growth, megaloblastic anemia, and the excretion of large amounts of orotate. When affected children are fed a pyrimidine nucleoside, usually uridine, the anemia decreases and the excretion of orotate diminishes. A likely explanation for the improvement is that the ingested uridine is phosphorylated to UMP, which is then converted to other pyrimidine nucleotides so that nucleic acid and protein synthesis can resume. In addition, the increased intracellular concentrations of pyrimidine nucleotides inhibit carbamoyl phosphate synthase, the first enzyme in the. naibwav of aro-tate synthesis. 

Miller and Wolfenden6 compared the rates of decarboxylation of the substrate of orotidine-5 -monophosphate decarboxylase (OMPDC) in quantitative detail, on and off the enzyme. They showed that the apparent unimolecular rate constant of decarboxylation of the substrate when bound to the enzyme is about 1015 times greater than the decarboxylation process in the absence of the enzyme. Further studies confirm that the enzyme-promoted reaction does not involve additional intermediates or covalent alterations of the substrate. The reaction consists of carbon dioxide being formed and the resulting carbanion becoming protonated. Since thermodynamic barriers are not altered by catalysis, the energy of the carbanion must be a component that reflects the energy of the environment in which it is created, one in which the carbanion that is formed is selectively stabilized. 

Figure 2.5 Logarithmic scale comparison of k,d and kuncat (= (rnon) for some representative reactions at 25 °C. The length of each vertical bar represents the rate enhancement. (Wolfenden, 2001). ADC arginine decarboxylase ODC orotidine 5 -phosphate decarboxylase STN staphylococcal nuclease GLU sweet potato /3-amylase FUM fumarase MAN mandelate racemase PEP carboxypeptodase B CDA E. coli cytidine deaminase KSI ketosteroid isomerase CMU chorismate mutase CAN carbonic anhydrase.

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