Organic modifier effect conformations

The above discussions have shown how selected analytical techniques can be applied to vastly different proteins to solve a myriad of problems. These include routine assays amino acid and sequencing analyses specialized techniques FAB-MS and IEF conventional techniques refined to improve their utility reversed-phase HPLC using different pHs, organic modifiers, and temperatures and chemical and enzymatic modifications. The latter two procedures have been shown to be effective not only in elucidating primary structure but also in probing the conformation of proteins. 

In contrast to the reactions of the cycloamyloses with esters of carboxylic acids and organophosphorus compounds, the rate of an organic reaction may, in some cases, be modified simply by inclusion of the reactant within the cycloamylose cavity. Noncovalent catalysis may be attributed to either (1) a microsolvent effect derived from the relatively apolar properties of the microscopic cycloamylose cavity or (2) a conformational effect derived from the geometrical requirements of the inclusion process. Kinetically, noncovalent catalysis may be characterized in the same way as covalent catalysis that is, /c2 once again represents the rate of all productive processes that occur within the inclusion complex, and Kd represents the equilibrium constant for dissociation of the complex. 

M. Kasha Comparative Effects of Radiation (ed. M. Burton, J. S. Kirby-Smith, and J. L. Magee) Wiley, New York 1960, p. 72-97, note esp. pages 87-89 (b) The presentation in Ref. 27 a needs to be modified slightly in the present discussion to conform to current organic mechanisms. For example, hydrogen abstraction is from a carbinol carbon rather than from the oxygen. 

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