Oligonucleotide, fluorescent labeled

Fuchs, B. M. Wallner, G. Beisker, W. Schwippl, I. Ludwig, W. Amann, R. Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 1998, 64, 4973 1982. 

DNA modified with a diamine compound to contain terminal primary amines may be coupled with amine-reactive fluorescent labels. The most common fluorophores used for oligonucleotide labeling are the cyanine dyes and derivatives of fluorescein and rhodamine (Chapter 9). However, any of the amine-reactive labels discussed throughout Chapter 9 are valid candidates for DNA applications. 

In order to facilitate analysis of FeBABE produced fragments, the prey protein or biomolecule is labeled at one end with a tag that can be detected after electrophoresis, usually in a transfer blot. The tag can be a fusion tag, such as 6X His, or any other group that can be targeted with an antibody and detected. Alternatively, radiolabels and fluorescent labels have been used with prey molecules, including the use of end-labeled DNA to study where DNA binding proteins dock onto the oligonucleotide sequence. 

A useful approach to monitor microbial populations in the biotreatment of hazardous wastes involves the detection of specific sequences of nucleic acids by hybridization with complementary oligonucleotide probes. Radioactive labels, fluorescent labels, and other kinds of labels are attached to the probes to increase sensitivity and simplicity of the hybridization... 

Other mutations that are located under the fluorescently labeled oligonucleotides will result in reduced melting temperatures of the oligonucleotide and could allow misinterpretation of the genotype. However, each mutation has a characteristic melting temperature that is reproducible and strict adherence to this temperature will omit misinterpretation. It is noteworthy that the temperature of the melting peak depends on the ratio of PCR product to Mg2+ and oligonucleotide concentration. Hence... 

Hybridisation can thus be used to produce probes, for example, for the detection of oligonucleotides in chick embryo tissue or of Epstein-Barr viruses (glandular fever) in transplant recipients - by detection of specific RNA strands. DNA dendrimers and corresponding detection devices have meanwhile become commercially available (Genisphere company). Fluorescence-labelled polynucleotide dendrimers have also been used for signal intensification in DNA microchip technology [59]. 

Thiazole orange derivatives have also been covalently attached to oligonucleotides to generate a fluorescently labelled probe oligonucleotide capable... 

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