Nitrogen-oxide reductases

An additional path to protonation of coordinated NO is the reduction of the M-NO unit electrochemically (73). Such coupled reduction/proto-nation schemes have been argued to be relevant to enzymatic nitrogen oxide reductases (41). Farmer and coworkers (74) accomplished such reductions by using graphite electrodes modified by depositing... 

In all the reactions catalyzed by copper enzymes except for copper-dependent nitrogen oxide reductases, dioxygen either functions as a substrate or electron receptor. 

Biochemically, in denitrification electrons are transported via cytochromes to nitrogen oxide reductases. These reductases are indicated in the scheme below as follows (1) nitrate reductase, (2) nitrite reductase, (3) nitric oxide reductase, and (4) nitrous oxide reductase. 

Each step of the denitrification pathway is catalyzed by a distinct enzyme, nitrogen oxide reductase (nitrate reductase, nitrite reductase, nitric oxide reductase, and nitrous oxide reductase), that transfers electrons from the chain to the particular intermediate. Thermodynamically, in the absence of oxygen, nitrogen oxides are the most preferred electron acceptors by facultative bacterial groups. The role of nitrogen oxides in regulating organic matter decomposition has been discussed in earlier chapters (see Chapter 5). 

This type of active site is also known as a mixed-valence copper site. Similarly to the type 3 site, it contains a dinuclear copper core, but both copper ions have a formal oxidation state of +1.5 in the oxidized form. This site exhibits a characteristic seven-line pattern in the EPR spectra and is purple colored. Both copper ions have a tetrahedral geometry and are bridged by two sulfur atoms of two cysteinyl residues. Each copper ion is also coordinated by a nitrogen atom from a histidine residue. The function of this site is long-range electron transfer, and it can be found, for example, in cytochrome c oxidase [12-14], and nitrous oxide reductase (Figure 5.1 e). 

This chapter focuses on the chemistry ofbiomimetic copper nitrosyl complexes relevant to the NO-copper interactions in proteins that are central players in dissimilatory nitrogen oxide reduction (denitrification). The current state of knowledge of NO-copper interactions in nitrite reductase, a key denitrifying enzyme, is briefly surveyed the syntheses, structures, and reactivity of copper nitrosyl model complexes prepared to date are presented and the insight these model studies provide into the mechanisms of denitrification and the structures of other copper protein nitrosyl intermediates are discussed. Emphasis is placed on analysis of the geometric features, electronic structures, and biomimetic reactivity with NO or NOf of the only structurally characterized copper nitrosyls, a dicopper(II) complex bridged by NO and a mononuclear tris(pyrazolyl)hydroborate complex having a Cu(I)-NO formulation. 

Figure 12 A diagram of the nitrogen cycle with catalyzing enzymes and metal requirements of each step. NIT, nitrogenase AMO, ammonium mono-oxygenase HAO, hydroxylamine oxidoreductase NAR, membrane-bound respiratory nitrate reductase NAP, periplasmic respiratory nitrate reductase NR, assimila-tory nitrate reductase NIR, respiratory nitrite reductase NiR, assimilatory nitrite reductase NOR, nitric oxide reductase N2OR, nitrous oxide reductase.

In contrast, many gram-negative bacteria contain a nitrate reductase (EC 1.7.99.4 and/or 1.9.6.1) that also reduces nitrate to nitrite although under anaerobic conditions. The dissimilatory nitrite reduction leading to denitrification encompasses then the reduction of nitrite to nitric oxide by dissimilatory nitrite reductases (NiR, EC 1.7.2.1) that, in combination with nitric oxide reductases (NOR) and nitrous oxide reductases (N2OR), transform nitrite into nitrogen ... 

Fujiwara and Fukumori, 1996). Nitric oxide reductase is also known, which lacks heme C and uses quinol as the electron donor (Suharti et al., 2001 de Vries et al., 2003). The cytochrome ebb-type enzyme has a molecular structure similar to the structure of the Cub binding portion in cytochrome c oxidase (Saraste and Castresana, 1994 Van der Oost et al., 1994 Zumft et al., 1994). Moreover, quinol NO reductase from Bacillus azotoformans is known to contain Cua. Nitrous oxide is further reduced to nitrogen gas (N2) by the catalysis of nitrous oxide reductase (N20 reductase) which is a multi-copper protein (Zumft and Matsubara, 1982). The structure of the copper-binding portion in the enzyme has been reported also to be similar to the structure of the Cua binding portion of cytochrome c oxidase (Chamock et al., 2000). 

There are two classes of nitrite reductases those involved in denitrification, which reduce nitrite to gaseous nitrogen oxides and the assimilatory and dis-similatory enzymes, which reduce nitrite directly to ammonia [125, 126]. Two types of denitrifying enzymes have been described, those containing hemes c and dx and those which contain only copper. There are also two kinds of as-similatory/dissimilatory enzymes the siroheme containing nitrite reductases like that of E. coli, which is used for detoxification of nitrite from the cytoplasm and is not coupled to energy conservation and the heme c nitrite reductases, which are usually coupled to energy conservation [127]. This last type of nitrite reductase is that usually associated with strict anaerobes, so only this one will be discussed in more detail. 

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