Nicotinamide adenine dinucleotide pyridoxal-5 -phosphate

The first examples of mechanism must be divided into two principal classes the chemistry of enzymes that require coenzymes, and that of enzymes without cofactors. The first class includes the enzymes of amino-acid metabolism that use pyridoxal phosphate, the oxidation-reduction enzymes that require nicotinamide adenine dinucleotides for activity, and enzymes that require thiamin or biotin. The second class includes the serine esterases and peptidases, some enzymes of sugar metabolism, enzymes that function by way of enamines as intermediates, and ribonuclease. An understanding of the mechanisms for all of these was well underway, although not completed, before 1963. 

Tissue also contains some endogenous species that exhibit fluorescence, such as aromatic amino acids present in proteins (phenylalanine, tyrosine, and tryptophan), pyridine nucleotide enzyme cofactors (e.g., oxidized nicotinamide adenine dinucleotide, NADH pyridoxal phosphate flavin adenine dinucleotide, FAD), and cross-links between the collagen and the elastin in extracellular matrix.100 These typically possess excitation maxima in the ultraviolet, short natural lifetimes, and low quantum yields (see Table 10.1 for examples), but their characteristics strongly depend on whether they are bound to proteins. Excitation of these molecules would elicit background emission that would contaminate the emission due to implanted sensors, resulting in baseline offsets or even major spectral shifts in extreme cases therefore, it is necessary to carefully select fluorophores for implants. It is also noteworthy that the lifetimes are fairly short, such that use of longer lifetime emitters in sensors would allow lifetime-resolved measurements to extract sensor emission from overriding tissue fluorescence. 

Enzymatic cofactors, such as nicotinamide adenine dinucleotide (NADH), nicotinamide adenine dinucleotide phosphate (NADPH), flavin adenine dinucleotide (EAD), flavin mononucleotide (EMN), and pyridoxal phosphate, are fluorescent and commonly found associated with various proteins where they are responsible for electron transport (see Fig. lb and Table 1). NADH and NADPH in the oxidized form are nonfluorescent, whereas conversely the flavins, FAD and EMN, are fluorescent only in the oxidized form. Both NADH and FAD fluorescence is quenched by the adenine found within their cofactor structures, whereas NADH-based cofactors generally remain fluorescent when interacting with protein structures. The fluorescence of these cofactors is often used to study the cofactors interaction with proteins as well as with related enzymatic kinetics (1, 9-12). However, their complex fluorescent characteristics have not led to widespread applications beyond their own intrinsic function. 

The chemistry of the cofactors has provided a fertile area of overlap between organic chemistry and biochemistry, and the organic chemistry of the cofactors is now a thoroughly studied area. In contrast, the chemistry of cofactor biosynthesis is stiU relatively underdeveloped. In this review the biosynthesis of nicotinamide adenine dinucleotide, riboflavin, folate, molyb-dopterin, thiamin, biotin, Upoic acid, pantothenic acid, coenzyme A, S-adenosylmethionine, pyridoxal phosphate, ubiquinone and menaquinone in E. coli will be described with a focus on unsolved mechanistic problems. 

Bi) is converted to thiamine pyrophosphate simply by the addition of pyrophosphate. It is involved in aldehyde group transfer. Niacin (nicotinic acid) is esterified to adenine dinucleotide and its two phosphates to form nicotinamide adenine dinucleotide. Pyridoxine (vitamin B ) is converted to either pyridoxal phosphate or pyridoxamine phosphate before complexing with enzymes. Riboflavin becomes flavin mononucleotide by obtaining one phosphate (riboflavin 5 -phosphate). If it complexes with adenine dinucleotide via a pyrophosphate ester linkage, it becomes flavin adenine dinucleotide. 

Figure 12-4. Gamma-aminobutyric acid metabolic interactions. GA = glutaminase GABA = y-aminobutyric acid GABA-T = GABA a-oxaloglutarate transaminase GAD = glutamic acid decarboxylase GS = glutamic synthetase NAD+ = nicotinamide adenine dinucleotide PP = pyridoxal phosphate (vitamin B6) SSA = succinic semialdehyde SSADH = succinic semialdehyde dehydrogenase GHB = y-hydroxybutyric acid GBL = y-butyrolactone.

In contrast to our understanding of the biosynthesis of cofactors, relatively little is known about cofactor degradation. Some previous research has been carried out to identify intermediates on these catabolic pathways, but very little information is available on the genes involved and on the enzymol-ogy. In this chapter we summarize our current understanding of the pyridoxal phosphate, riboflavin, heme, thiamin, biotin, nicotinamide adenine dinucleotide (NAD), folate, lipoate, and coenzyme A catabolic pathways in all life-forms and discuss mechanistic aspects of the most interesting catabolic reactions. 

Pyridoxol 210 (pyridoxine, 3-hydroxy-4,5-bis(hydroxymethyl)-2-methylpyridine, vitamin B6) was formerly known as adermine (Kuhn 1938) because vitamin B5 deficiency causes skin diseases in animals. Pyridoxal (211, R = CHO) and pyridoxamine (211, R = CH2NH2) also belong to the vitamin B group. Pyridoxal phosphate 212 is a coenzyme for many of the enzymes involved in the metabolism of amino acids. Nicotinamide adenine dinucleotide 213 (NAD , reduced form NADH) is a component of oxidoreductases (for its action see p 293, synthesis see p 131). 

Nicotinamide adenine dinucleotide, oxidation-reduction flavin adenine dinucleotide, oxidation-reduction coenzyme A, acyl transfer pyridoxal phosphate, transamination biotin, carboxylation lipoic acid, acyl transfer. 

AA, ascorbic acid AdoCbl, adenosylcobalamin CoA, co-enzyme A DHA, dehydroascorbic acid TPP, thiamin pyrophosphate FAD, flavin adenine dinucleotide FMN, flavin mononucleotide MeCbl, methylcobalamin NAD", nicotinamide adenine dinucleotide NADP", nicotinamide adenine dinucleotide phosphate PLP, pyridoxal phosphate PGA, pteroylglutamic acid. 

Decarboxylation removal of a carboxyl group as CO2, from a ketoacid or from an amino acid. D. of ketoacids occurs several times in the course of the TH-carboxylic acid cycle (see). TTie D. of P-ketoacids often occurs spontaneously. In biological systems the oxidative D. of a-ketoacids requires coenzymes such as thiamin pyrophosphate, lipoic acid, coenzyme A, flavin adenine dinucleotide or nicotinamide adenine dinucleotide. Oxidative D. of Pyruvate (see) to ace-tyl-CoA and of a-ketoglutarate to succinyl-CoA are nodes at which many metabolic pathways cross. D. of amino acids is catalysed by Pyridox phosphate (see) enzymes. 

Figure 5. Ceramide biosynthesis (modified from Kolter and Sandhoff, 1999). PLP, pyridoxal phosphate. NADPH, nicotinamide adenine dinucleotide phosphate.

One important subgroup of the lyases are the decarboxylases. The decarboxylation of amino acids is assisted by pyridoxal phosphate as a prosthetic group, whereas in the decarboxylation of pyruvate to acetaldehyde, thiamine pyrophosphate (TPP) plays that role. Oxidative decarboxylation, lastly, depends on the cooperation of no fewer than five cofactors thiamine pyrophosphate, lipoic acid, coenzyme A, flavin-adenine dinucleotide, and nicotinamide-adenine dinucleotide. 

---