Natural selection genetic code

If the genetic code in its present form still poses so many questions, the elucidation of its development three to four billion years ago will be even more difficult Some researchers feel that an exact reconstruction of the process of its construction may never be possible, while others see the genetic code as being purely fortuitous, a system which was frozen at some time in history. It appears plausible that the code, just like other organism properties, is the product of natural selection (Vogel, 1998). 

Clearly this means a complete rejection of the fundamental Darwinian principle of common descent. Also, he rejects mutation and natural selection as the mechanisms that produced species. Is this view also contrary to the universality of biochemistry, and in particular the monophyletic origin of life, to which most biochemists today would subscribe Probably yes but of course if one assumes an absolute determinism, then the laws of chemistry and physics would produce the same products at each different start. This goes against the notion of frozen accident and the unique origin of the genetic code. So, there was never a time on Earth with only one kind of species, and the development of species was parallel rather than sequential. Of course all these ideas are substantiated by arguments and data - for these, the reader should refer to the original sources. 

We conclude that, during postchemical evolution, what was taking place was not only a development of metabolic structures, but also an evolution of coding rules, of natural conventions. The true mechanism of postchemical evolution, in other words, was not genetic drift alone, but a combination of drift and natural conventions. To the classical concepts of evolution by genetic drift and by natural selection, we must add therefore the concept of evolution by natural conventions. 

Animate objects are self-replicating systems containing a genetic code that undergoes mutation and whose variant individuals undergo natural selection. 

We present experimental results on photophysical deactivation pathways of uracil and thymine bases in the gas phase and in solvent/solute complexes. After photoexcitation to the S2 state, a bare molecule is tunneled into and trapped in a dark state with a lifetime of tens to hundreds of nanoseconds. The nature of this dark state is most likely a low lying nn state. Solvent molecules affect the decay pathways by increasing IC from the S2 to the dark state and then further to the ground state, or directly from S2 to S0. The lifetimes of the S2 state and the dark state are both decreased with the addition of only one or two water molecules. When more than four water molecules are attached, the photophysics of these hydrated clusters rapidly approaches that in the condensed phase. This model is now confirmed from other gas phase and liquid phase experiments, as well as from theoretical calculations. This result offers a new interpretation on the origin of the photostability of nucleic acid bases. Although we believe photochemical stability is a major natural selective force, the reason that the nucleic acid bases have been chosen is not because of their intrinsic stability. Rather, it is the stability of the overall system, with a significant contribution from the environment, that has allowed the carriers of the genetic code to survive, accumulate, and eventually evolve into life s complicated form. 

The genetic code is degenerate. Of the 20 amino acids, 18 are specified by more than one codon. Hence, many nucleotide changes (especially in the third base of a codon) do not alter the nature of the encoded amino acid. Mutations leading to an altered amino acid are usually more deleterious than those that do not and hence are subject to more stringent selection. 

By analogy to the terms co- and posttranslational modifications of peptides and proteins to define these transformations in the in vivo biosynthesis, chemical manipulations at least theoretically can be carried out in a co- or postsynthetic manner. While nature exploits the sequence- and even conformation-dependent regioselectivity of enzymes to expand the molecular and functional diversity of peptides and proteins beyond the genetic code,P l synthetic chemical reactions are insufficient for the required selectivity even with the most advanced conjugation techniques. Therefore, the tactics usually employed involves a cosynthetic approach, i.e. synthesis of polypeptide chains with annino acid derivatives or... 

Not all characteristics are subject to successful selection pressure. There must be natural variation, differences in reproduction, and inheritability of the trait in order for selection to produce results. Natural selection requires not only that there be genetic variation but also that the genes be expressed (Mulcahy and Mulcahy, 1987). Without the latter, the genetic code present in a BU is simply irrelevant. Those traits that are not genetically determined cannot be selected for. Predation can select for different traits than would otherwise be chosen. An example of this is the color of male guppy fish females breed preferentially with the most colorful ones, but predators can most easily locate and eat the most colorful ones. Thus, male guppies in upland streams where there are few predators are more colorful than guppies downstream where predators abound (Palumbi, 2001). 

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