Molecules charge distribution

Correlated ab initio calculations, atoms-in-molecules charge distribution analysis... 

The solvent polarization can be formally decomposed into different contributions each related to the various degrees of freedom of the solvent molecules. In common practice such contributions are grouped into two terms only [41,52] one term accounts for all the motions which are slower than those involved in the physical phenomenon under examination (the slow polarization), the other includes the faster contributions (the fast polarization). The next assumption usually exploited is that only the slow motions are instantaneously equilibrated to the momentary molecule charge distribution whereas the fast cannot readjust, giving rise to a nonequilibrium solvent-solute system. 

At small separations or for molecules with more complicated charge distributions, the more general form... 

There are tliree important varieties of long-range forces electrostatic, induction and dispersion. Electrostatic forces are due to classical Coulombic interactions between the static charge distributions of the two molecules. They are strictly pairwise additive, highly anisotropic, and can be either repulsive or attractive. 

The long-range interactions between a pair of molecules are detemiined by electric multipole moments and polarizabilities of the individual molecules. MuJtipoJe moments are measures that describe the non-sphericity of the charge distribution of a molecule. The zeroth-order moment is the total charge of the molecule Q = Yfi- where q- is the charge of particle and the sum is over all electrons and nuclei in tlie molecule. The first-order moment is the dipole moment vector with Cartesian components given by... 

Consider the interaction of a neutral, dipolar molecule A with a neutral, S-state atom B. There are no electrostatic interactions because all the miiltipole moments of the atom are zero. However, the electric field of A distorts the charge distribution of B and induces miiltipole moments in B. The leading induction tenn is the interaction between the pennanent dipole moment of A and the dipole moment induced in B. The latter can be expressed in tenns of the polarizability of B, see equation (Al.S.g). and the dipole-mduced-dipole interaction is given by... 

The microscopic origin of x and hence of Pis the non-unifonnity of the charge distribution in the medium. To lowest order this is given by the dipole moment, which in turn can be related to the dipole moments of the component molecules in the sample. Thus, on a microscopic quantum mechanical level we have the relation... 

In either case, the structure of the solvation shell has to be calculated by otiier methods supplied or introduced ad hoc by some fiirther model assumptions, while charge distributions of the solute and within solvent molecules are obtained from quantum chemistry. 

Besides the aforementioned descriptors, grid-based methods are frequently used in the field of QSAR quantitative structure-activity relationships) [50]. A molecule is placed in a box and for an orthogonal grid of points the interaction energy values between this molecule and another small molecule, such as water, are calculated. The grid map thus obtained characterizes the molecular shape, charge distribution, and hydrophobicity. 

This coding is performed in three steps (cf Chapter 8) First the 3D coordinates of the atoms arc calculated using the structure generator CORINA (COoRdlNAtes). Subsequently the program PETRA (Parameter Estimation for the Treatment of Reactivity Applications) is applied for calculating physicochemical properties such as charge distribution and polarizability. The 3D information and the physicochemical atomic properties are then used to code the molecule. 

Despite th ese reservation s. Mu Ilikeri population -derived atomic charges arc easy to compute. Empirical investigation shows that they have various uses, they provide approximate representation of the 3D charge distribution within a molecule. 

Our discussion of elecfronic effects has concentrated so far on permanent features of the cliarge distribution. Electrostatic interactions also arise from changes in the charge distribution of a molecule or atom caused by an external field, a process called polarisation. The primary effect of the external electric field (which in our case will be caused by neighbouring molecules) is to induce a dipole in the molecule. The magnitude of the induced dipole moment ginj is proportional to the electric field E, with the constant of proportionahty being the polarisability a ... 

For large molecules, computation time becomes a consideration. Orbital-based techniques, such as Mulliken, Lowdin, and NBO, take a negligible amount of CPU time relative to the time required to obtain the wave function. Techniques based on the charge distribution, such as AIM and ESP, require a sig-nihcant amount of CPU time. The GAPT method, which was not mentioned above, requires a second derivative evaluation, which can be prohibitively expensive. 

Tschitschibabin amination of pyridine, the mechanism of which has been established as involving an intermediate charge distribution of the thiazole molecule as well as of the thiazolium ion. 

Thus electrostatic potential maps can give an exag gerated picture of the charge distribution when the entire palette is used In most cases that won t mat ter to us inasmuch as we are mostly concerned with the distribution within a single molecule In those few cases where we want to compare trends in a se ries of molecules we II use a common scale and will point that out... 

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