Molecular method: MINDO

Geometric Optimization. The structure of the molecule as built by CHEMLAB (or a input from other methods) can be optimized through either a full force field molecular mechanics calculation (MMII) or with the semi-empirical molecular orbital methods MINDO-3 and MNDO. 

The semi-empirical molecular orbital method MINDO/3 has been used to calculate transition state geometries for the following decompositions. 

Apractical introduction to molecular mechanics and semi-empirical quantum mechanics calculations, with extensive examples from the MMP2 (not in HyperChem), MINDO/3, and MNDO methods. One of the more accessible books for new computational chemists. 

In order to conserve the total energy in molecular dynamics calculations using semi-empirical methods, the gradient needs to be very accurate. Although the gradient is calculated analytically, it is a function of wavefunction, so its accuracy depends on that of the wavefunction. Tests for CH4 show that the convergence limit needs to be at most le-6 for CNDO and INDO and le-7 for MINDO/3, MNDO, AMI, and PM3 for accurate energy conservation. ZINDO/S is not suitable for molecular dynamics calculations. 

The CNDO/INDO, MINDO/3, Z3NDO/1, and ZINDO/S methods might be expected to imply an even simpler equation for the electron density than the above. For example, a rigorous complete neglect of CNDO approximation, suggests that equations (87) and (88) should be replaced by expressions with a sum only over diagonal elements of the density matrix. This would represent a molecular charge density that is the exact sum of atomic densities. Alter-... 

HyperChem currently supports one first-principle method ab initio theory), one independent-electron method (extended Hiickel theory), and eight semi-empirical SCFmethods (CNDO, INDO, MINDO/3, MNDO, AMI, PM3, ZINDO/1, and ZINDO/S). This section gives sufficient details on each method to serve as an introduction to approximate molecular orbital calculations. For further details, the original papers on each method should be consulted, as well as other research literature. References appear in the following sections. 

Heats of formation, molecular geometries, ionization potentials and dipole moments are calculated by the MNDO method for a large number of molecules. The MNDO results are compared with the corresponding MINDO/3 results on a statistical basis. For the properties investigated, the mean absolute errors in MNDO are uniformly smaller than those in MINDO/3 by a factor of about 2. Major improvements of MNDO over MINDO/3 are found for the heats of formation of unsaturated systems and molecules with NN bonds, for bond angles, for higher ionization potentials, and for dipole moments of compounds with heteroatoms. 

The semiempirical molecular orbital (MO) methods of quantum chemistry [1-12] are widely used in computational studies of large molecules. A number of such methods are available for calculating thermochemical properties of ground state molecules in the gas phase, including MNDO [13], MNDOC [14], MNDO/d [15-18], AMI [19], PM3 [20], SAMI [21,22], OM1 [23], OM2 [24,25] MINDO/3 [26], SINDOl [27,28], and MSINDO [29-31]. MNDO, AMI, and PM3 are widely distributed in a number of software packages, and they are probably the most popular semiempirical methods for thermochemical calculations. We shall therefore concentrate on these methods, but shall also address other NDDO-based approaches with orthogonalization corrections [23-25],... 

Several different molecular orbital methods have been used in SAR investigations. These include simple Huckel theory, HT,(38) extended Huckel theory, EHT,(39) CND0,( ) NDD0,(41) MINDO/3,(42) and PCILO,(43)... 

Dynamic NMR gives information on the number and symmetries of conformations present in solution and on the energy barriers separating these conformations. This is particularly true for systems with barriers between about 25 and 90 kJ mol-1, a situation which often occurs in the medium ring. The interpretation of the NMR data can be carried out by the examination of molecular models, but this is a relatively crude and sometimes misleading method. Empirical force field (or molecular mechanics) calculations are much superior, even though the parametrization of heteroatoms may be open to question. Quantum mechanical calculations are not very suitable the semiempirical type, e.g. MINDO, do not reproduce conformational properties of even cyclohexane satisfactorily, and the ab initio... 

Microwave spectrometer, 219-221 Microwave spectroscopy, 130, 219-231 compilations of results of, 231 dipole-moment measurements in, 225 experimental procedures in, 219-221 frequency measurements in, 220 and molecular structure, 221-225 and rotational barriers, 226-228 and vibrational frequencies, 225-226 Mid infrared, 261 MINDO method, 71,76 and force constants, 245 and ionization potentials, 318-319 Minimal basis set, 65 Minor, 14 Modal matrix, 106 Molecular orbitals for diatomics, 58 and group theory, 418-427 for polyatomics, 66... 

Hiickel and extended Huckel methods are termed semi-empirical because they rely on experimental data for the quantification of parameters. There are other semi-empirical methods, such as CNDO, MINDO, INDO, in which experimental data are still used, but more care is taken in evaluating the Htj. These methods are self-consistent field procedures based on 3 SCF. They are discussed in various works on molecular orbital theory.4... 

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