Malonyl-CoA 16

Phenylalanine ammonia-lyase (PAL) eliminates the amino group from phenylalanine (12) to produce cinnamic acid (13). Cinnamate-4-hydroxylase (C4H) hydroxidizes compound (13) to yield p-coumaric acid (14). 4-CoumaroyhCoA-ligase (4CL) complex catalyzed the conversion of p-coumaric acid (14) and coenzyme A (CoA) to 4-coumaroyl-CoA (15) and 3 moles malonyl-CoA (16). Stilbene synthase (STS) converts these two compounds (15,16) into resveratrol of stilbene (7) (Fig. 3) [23,24], 

Chalcone synthase (CHS) and chalcone reductase (CHR) convert 4-coumaro-yl-CoA (15) and 3 mol malonyl-CoA (16) to trihydroxychalcone (a chalcone) (17) via tetrahydroxychalcone (a chalcone) (18). Chalcone isomerase (CHI) converts trihydroxychalcone (a chalcone) (17) into liquiritigenin (7,4/-dihydroxyllavanone, a flavanone) (19). Isoflavone synthase (IFS) converted flavanone (19) to isoflavones (20) such as daidzein (21) and genis-tein (22). Isoflavone 2/-hydroxylase (I2 H) hydroxylated isoflavones (20) to 4/-methoxyisoflavones (23). Isoflavone 2 -hydroxylase (I2 H) hydroxylated 4/-methoxyisoflavones (23) into 2/-hydroxy-4/-methoxyisoflavones (24). Isoflavone reductase (IFR) reduced 2/-hydroxy-4/-methoxyisoflavones (24) to 2/-hydroxy-4/-methoxyisoflavonones (25). Finally, vestitone reductase (VR) and 4/-methoxyisoflavanol dehydrogenase (DMID) cyclized 2/-hydroxy-4/-methoxyisoflavonones (25) to form isoflavonoids (26) such as medicarpin (27) (Fig. 4) [23,24]. 

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As we began this chapter, we saw that photosynthesis traditionally is equated with the process of COg fixation, that is, the net synthesis of carbohydrate from COg. Indeed, the capacity to perform net accumulation of carbohydrate from COg distinguishes the phototrophic (and autotrophic) organisms from het-erotrophs. Although animals possess enzymes capable of linking COg to organic acceptors, they cannot achieve a net accumulation of organic material by these reactions. For example, fatty acid biosynthesis is primed by covalent attachment of COg to acetyl-CoA to form malonyl-CoA (Chapter 25). Nevertheless, this fixed COg is liberated in the very next reaction, so no net COg incorporation occurs. 

Formation of Malonyl-CoA Activates Acetate Units for Fatty Acid Synthesis... 

The acetate units are activated by formation of malonyl-CoA (at the expense of ATP). 

The addition of two-carbon units to the growing chain is driven by decarboxylation of malonyl-CoA. 

Eukaryotic cells face a dilemma in providing suitable amounts of substrate for fatty acid synthesis. Sufficient quantities of acetyl-CoA, malonyl-CoA, and NADPH must be generated in the cytosol for fatty acid synthesis. Malonyl-CoA is made by carboxylation of acetyl-CoA, so the problem reduces to generating sufficient acetyl-CoA and NADPH. 

Acetate Units Are Committed to Fatty Acid Synthesis by Formation of Malonyl-CoA... 

Rittenberg and Bloch showed in the late 1940s that acetate units are the building blocks of fatty acids. Their work, together with the discovery by Salih Wakil that bicarbonate is required for fatty acid biosynthesis, eventually made clear that this pathway involves synthesis of malonyl-CoA. The carboxylation of acetyl-CoA to form malonyl-CoA is essentially irreversible and is the committed step in the synthesis of fatty acids (Figure 25.2). The reaction is catalyzed by acetyl-CoA carboxylase, which contains a biotin prosthetic group. This carboxylase is the only enzyme of fatty acid synthesis in animals that is not part of the multienzyme complex called fatty acid synthase. 

FIGURE 25.2 (a) The acetyl-CoA carboxylase reaction produces malonyl-CoA for fatty acid synthesis, (b) A mechanism for the acetyl-CoA carboxylase reaction. Bicarbonate is activated for carboxylation reactions by formation of N-carboxybiotin. ATP drives the reaction forward, with transient formation of a carbonylphosphate intermediate (Step 1). In a typical biotin-dependent reaction, nncleophilic attack by the acetyl-CoA carbanion on the carboxyl carbon of N-carboxybiotin—a transcarboxylation—yields the carboxylated product (Step 2). 

FIGURE 25.7 The pathway of palmhate synthesis from acetyl-CoA and malonyl-CoA. Acetyl and malonyl building blocks are introduced as acyl carrier protein conjugates. Decarboxylation drives the /3-ketoacyl-ACP synthase and results in the addition of two-carbon units to the growing chain. Concentrations of free fatty acids are extremely low in most cells, and newly synthesized fatty acids exist primarily as acyl-CoA esters. 

In the end, seven malonyl-CoA molecules and one acetyl-CoA yield a palmi-tate (shown here as palmitoyl-CoA) ... 

Mammals can add additional double bonds to unsaturated fatty acids in their diets. Their ability to make arachidonic acid from linoleic acid is one example (Figure 25.15). This fatty acid is the precursor for prostaglandins and other biologically active derivatives such as leukotrienes. Synthesis involves formation of a linoleoyl ester of CoA from dietary linoleic acid, followed by introduction of a double bond at the 6-position. The triply unsaturated product is then elongated (by malonyl-CoA with a decarboxylation step) to yield a 20-carbon fatty acid with double bonds at the 8-, 11-, and 14-positions. A second desaturation reaction at the 5-position followed by an acyl-CoA synthetase reaction (Chapter 24) liberates the product, a 20-carbon fatty acid with double bonds at the 5-, 8-, IT, and ITpositions. 

FIGURE 25.16 Regulation of fatty acid synthesis and fatty acid oxidation are conpled as shown. Malonyl-CoA, produced during fatty acid synthesis, inhibits the uptake of fatty acylcarnitine (and thus fatty acid oxidation) by mitochondria. When fatty acyl CoA levels rise, fatty acid synthesis is inhibited and fatty acid oxidation activity increases. Rising citrate levels (which reflect an abundance of acetyl-CoA) similarly signal the initiation of fatty acid synthesis. 

Carefully count and account for each of the atoms and charges in the equations for the synthesis of palmitoyl-CoA, the synthesis of malonyl-CoA, and the overall reaction for the synthesis of palmi-toyl-CoA from acetyl-CoA. 

The enolate ion adds in an aldol-like reaction to a C=0 bond of carbon dioxide, yielding malonyl CoA. 

Figure 29.6 MECHANISM Mechanism of step 3 in Figure 29.5, the biotin-dependent carboxyiation of acetyl CoA to yield malonyl CoA.

Following the formation of malonyl CoA, another nucleophilic acyl substitution reaction occurs in step 4 to form the more reactive malonyl ACP, thereby binding the malonyl group to an ACP arm of the multienzyme synthase. At this point, both acetyl and malonyl groups are bound to the enzyme, and the stage is set for their condensation. 

Step 1 of Figure 29.13 Carboxylation Gluconeogenesis begins with the carboxyl-afion of pyruvate to yield oxaloacetate. The reaction is catalyzed by pyruvate carboxylase and requires ATP, bicarbonate ion, and the coenzyme biotin, which acts as a carrier to transport CO2 to the enzyme active site. The mechanism is analogous to that of step 3 in fatty-acid biosynthesis (Figure 29.6), in which acetyl CoA is carboxylated to yield malonyl CoA. 

Fatty acid oxida- T Acetyl-CoA carboxylase-2 l Activity, J, malonyl-CoA Liver, muscle,... 

Biotin is involved in carboxylation and decarboxylation reactions. It is covalently bound to its enzyme. In the carboxylase reaction, C02 is first attached to biotin at the ureido nitrogen, opposite the side chain in an ATP-dependent reaction. The activated C02 is then transferred from carboxybiotin to the substrate. The four enzymes of the intermediary metabolism requiring biotin as a prosthetic group are pyruvate carboxylase (pyruvate oxaloacetate), propionyl-CoA-carboxylase (propionyl-CoA methylmalonyl-CoA), 3-methylcroto-nyl-CoA-carboxylase (metabolism of leucine), and actyl-CoA-carboxylase (acetyl-CoA malonyl-CoA) [1]. 

Murthy, M.S.R. Pande, S.V. (1987). Malonyl-CoA binding site and the overt carnitine palmitoyltransferase activity reside on the opposite sides of the outer mitochondrial membrane. Proc. Nat. Acad. Sci. USA 84,378-382. 

Bicarbonate as a source of CO2 is required in the initial reaction for the carboxylation of acetyl-CoA to mal-onyl-CoA in the presence of ATP and acetyl-CoA carboxylase. Acetyl-CoA carboxylase has a requirement for the vitamin biotin (Figure 21-1). The enzyme is a multienzyme protein containing a variable number of identical subunits, each containing biotin, biotin carboxylase, biotin carboxyl carrier protein, and transcarboxylase, as well as a regulatory allosteric site. The reaction takes place in two steps (1) carboxylation of biotin involving ATP and (2) transfer of the carboxyl to acetyl-CoA to form malonyl-CoA. 

The equation for the overall synthesis of palmitate from acetyl-CoA and malonyl-CoA is ... 

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