Linkers transformations

Fig. 8. Continuous variation in "size" of a hifunctional cross linker transforming a network containing trifunctional branch points to a network containing tetrafunctional branch points.

In contrast, Nagy pointed out [13] that the zwitterionic P-alanine ( H3N-CH2-CH2-C00 ), which forms an intramolecular hydrogen bond in its favorable NCCC gauche conformation in aqueous solution (note the difference with GABA upon one less CH2 group in the linker), transforms to the intramolecularly hydrogen-bonded neutral species in chloroform with an anti -COOH group. This is an important consequence of the solvent effect on the amino acid tautomeric forms in different media. 

There is a large range of resins available for SPOS. These resins are derivatised polymer supports with a range of linkers. The roles of linkers are (i) to provide point(s) of attachment for the tethered molecule, akin to a solid supported protecting group(s), (ii) to provide distance from the polymeric backbone in order to minimise interactions with the backbone, (iii) to enable cleavage of product molecules under conditions compatible with the stability of the molecules and the reaction conditions employed for chemical transformations. Hence in order to... 

FIGURE 3.5 Fourier Transform infrared (FTIR) spectra of acrylic rubber (ACM)-siUca hybrid nanocomposites. The numbers after ACM (10 and 50) indicate the wt% tetraethoxysilane (TEOS) concentration. The letters preceding the numbers indicate the ACM-silica samples cross-linked from benzoyl peroxide (B) and a mixed cross-linker hexamethylene diamine carbamate and ammonium benzoate (D). The numbers over the absorption peaks are the wave numbers corresponding to absorbance of those peaks. (From Bandyopadhyay, A., Bhowmick, A.K., and De Sarkar, M., J. Appl. Polym. Sci., 93, 2579, 2004. Courtesy of Wiley InterScience.)... 

RajanBabu reported the first preparation of a bis-imidazolium salt 15 bearing a chiral linker (Scheme 11). The starting material was the enantiomerically pure (S)-l,l -bi-2-naphtol bis(trifluoromethanesulfonate) which was transformed in two steps into the dibromomethyl derivative 16 and then into the bis-imidazole. Quaternarization of this compound afforded 15 [20]. 

Combs and coworkers have presented a study on the solid-phase synthesis of oxa-zolidinone antimicrobials by microwave-mediated Suzuki coupling [38], A valuable oxazolidinone scaffold was coupled to Bal resin (PS-PEG resin with a 4-formyl-3,5-dimethoxyphenoxy linker) to afford the corresponding resin-bound secondary amine (Scheme 7.18). After subsequent acylation, the resulting intermediate was transformed to the corresponding biaryl compound by microwave-assisted Suzuki coupling. Cleavage with trifluoroacetic acid/dichloromethane yielded the desired target structures. 

Besides direct solid phase fixation, the functional OH-group of 49 may be used for further transformations. Esterification with acetyl chloride at the OH-linker (Scheme 27) leads to 50, providing a heteroscorpionate ligand with the protected OH-linker. An intramolecular hydrogen bridge is found in the X-ray structure [d(01-N21) = 2.478 (3) A] between the carboxylic acid and the pyrazole nitrogen (Fig. 32b). 

A key aspect of any synthesis strategy on a polymeric support is the linkage element, which acts as a tether to the polymeric support. Ideally, the linker should be stable to all reaction conditions used in a synthesis sequence and should be cleaved quantitatively under conditions that do not degrade the desired target molecule [6]. In this overview the different kinds of linkers and the synthetic transformations that can be used on polymeric supports will be presented. At the end, synthetic strategies for the synthesis of heterocycles and natural products will be mentioned. 

The development of sulfone linkers, the exploration of sulfone based chemical transformations and cleavage strategies are an important objective in soHd-phase organic synthesis. This kind of Hnker (Tab. 3.7) has been used with thioethers [108], sulfoxides [109], sulfones [110], sulfonic acids and their corresponding derivatives [111]. Because carbon-sulfur bonds can be cleaved under very mild conditions, some Hnkers have been based on this effect. They can be cleaved under reductive conditions ]112, 113], photolytic conditions [114, 115] or with strong bases [116]. Various safety catch Hnkers have been developed based on the fact that thiols can be oxidized to sulfoxides and sulfones [112, 113]. 

Solid-phase strategies associated with the construction of organic molecules and their functionalization are often limited by the nature of the anchoring group or the linker. Traceless linkers allow chemical transformations on the polymer bound molecules, which can be cleavage to the formation of a C-H bond on the seceding molecule and which enables the preparation of pure hydrocarbons (Table 3.13) [134, 190]. 

There are only few examples for oxidation reactions on solid supports, because most linkers or polymeric supports are sensitive towards some reagents suitable for classical transformations. Classical oxidation reagents are not soluble in most solvents used in the solid-phase organic synthesis step (but e.g. Scheme 3.10). 

In principle, linker groups are polymer-enlarged versions of blocking functions used in regular solution-phase chemistry. Therefore, enzymatic transformations that may be employed for the removal of protecting groups in solution, in principle may also open up alternative opportunities for releasing compounds from polymeric supports. The linkers developed so far can be divided into exo- and endo-linkers (Fig. 10.1) cleavable by exo- respectively endo-enzymes, as proposed by Flitsch et al. [6]. 

To examine the second way of binding the chloro ester 1-Me to a polymer as in 268 (Fig. 12), the TentaGel-S-COOH resin 279 which contains a succinyl linker, was esterified with the 2 -(4-hydroxybutyl)-substituted chloro ester 280 (prepared by debenzylation of compound 2l-Me) (Scheme 81) [11b]. Only the Michael addition of secondary amines onto 281 and the removal of the adducts 283 from the resin has been probed so far, any further transformations of polymer-bound compounds 281 need yet to be developed. 

The synthesis of the module is provided in Scheme 10.5 (Kushner et al. 2007). Double alkylation of ethyl acetoacetate followed by guanidine condensation afforded alkenyl-pyrimidone intermediate 24 (Kushner et al. 2007). Isocyanate 25 was coupled to pyrimidone 24 to yield 26. Upon dimerization in DCM, RCM effectively cyclized the two UPy units (Mohr et al. 1997 Week et al. 1999). A one-pot reduction and deprotection through hydrogenation using Pearlman s catalyst gave diol module 27. Finally, capping 27 with 2-isocyanatoethyl methacrylate at both ends provided the UPy sacrificial cross-linker 28, which was thoroughly characterized by H- and C-NMR, Fourier transform IR (FTIR), and mass spectrometry. 

Piperazine-2,5-diones can be symmetric or asymmetric. Symmetric DKPs are readily obtained by heating amino acid esters,1179-181 whereas asymmetric DKPs are obtained directly from the related dipeptides under basic or, more properly, acid catalysis, or by cyclocondensation of dipeptide esters.1182-185 As an alternative procedure hexafluoroacetone can be used to protect/activate the amino acid for the synthesis of symmetric DKPs or of the second amino acid residue for synthesis of the dipeptide ester and subsequent direct cyclocondensation to DKPs.1186 The use of active esters for the cyclocondensation is less appropriate since it may lead to epimerization when a chiral amino acid is involved as the carboxy component in the cyclization reaction. Resin-bound DKPs as scaffolds for further on-resin transformations are readily prepared using the backbone amide linker (BAL) approach, where the amino acid ester is attached to the BAL resin by its a-amino group and then acylated with a Fmoc-protected amino acid by the HATU procedure, N -deprotection leads to on-resin DKP formation1172 (see Section 6.8.3.2.2.3). 

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