Solid-phase synthesis, linear

Figure 12-3 Plots of the degree of polymerization versus the cumulative number of synthetic steps for various repetitive syntheses (a) conventional linear solid-phase synthesis (b) nonlinear straight-chain sequence synthesis (c) dendrimer synthesis (branching multiplicity of three) (d) double exponential den-drimer synthesis (branching multiplicity of three). In all cases, the degree of polymerization is defined as the total number of monomer units per polymer molecule.

Fig. 1. Linear solid-phase synthesis of biopolymer-like peptides and polynucleotides.

The environment in the swollen 1% cross-linked bead is substantially like a solution of linear polymer with no evidence for a fundamental resin-caused physical limitation to the solid-phase synthesis method. 

Scheme 2.8 Solid-phase synthesis of a linear hexasaccharide.

Once it is part of a cyclic dipeptide, the prolyl residue becomes susceptible to enantiomerization by base (see Section 7.22). The implication of the tendency of dipeptide esters to form piperazine-2,5-diones is that their amino groups cannot be left unprotonated for any length of time. The problem arises during neutralization after acidolysis of a Boc-dipeptide ester and after removal of an Fmoc group from an Fmoc-dipeptide ester by piperidine or other secondary amine. The problem is so severe with proline that a synthesis involving deprotection of Fmoc-Lys(Z)-Pro-OBzl produced only the cyclic dipeptide and no linear tripeptide. The problem surfaces in solid-phase synthesis after incorporation of the second residue of a chain that is bound to the support by a benzyl-ester type linkage. There is also the added difficulty that hydroxymethyl groups are liberated, and they can be the source of other side reactions. 

Moreover, if the average yield per step decreases only slightly, let us say down to 85%, the overall yield of the convergent synthesis is still quite acceptable -37%-, but now the overall yield of the linear synthesis would be only 0.004%. It is clear, therefore, that for polypeptides of any complexity and for proteins, linear syntheses in solution are not practicable even if the yields of each step are kept high. However, solid-phase peptide synthesis can be quite efficient. This is because solid-phase synthesis represents an improvement in linear methodology which has, as yet, not found an equivalent in convergent methods [17]. 

A key element in the original Merriheld procedure of solid-phase synthesis is the solid support system. That system consists of two parts a resin head and a. linker, an organic compound used to join the hrst amino acid to the resin head. The resin beads used by Merriheld are small spherical objects made of cross-linked polystyrene. This material consists primarily of the polymer polystyrene whose linear molecules are linked to each other at various positions by the addition of divinylhenzene (CH2 = CHCgH jCH =CH2). The hnal cross-linked material is relatively rigid, with enough hexihility to permit... 

Synthesis. The synthesis of cyclo retro enantlcxner 6 Is outlined in Scheme 1. Compounds 4, 5, 7> and 9 were prepared by an analogous route. Initially, a protected linear hexapeptide was prepared by solid phase synthesis on 2% crossllnked polystyrene resin beginning with a protected lysine resin. The peptide was then removed from the polymer by hydrazlnolysis. Cycllzatlon was... 

The antibiotic viscosin from Pseudomonas viscosa (Scheme 8) is a cyclo-depsipeptide acyl-ated at the N-terminus with D-3-hydroxydecanoic add.[103 112] The C-terminal carboxy group is esterified with the hydroxy group of the Thr3 residue. The synthesis of this natural product presents the problem of an ester ring closure and was performed in two steps with initial solid-phase synthesis of the Thr3-0-branched linear intermediate followed by ring closure with formation of the amide bond.1 131... 

In this section the use of polystyrene and copolymers of styrene with various cross-linking agents as supports for solid-phase organic synthesis is discussed. Copolymers of styrene with divinylbenzene are the most common supports for solid-phase synthesis. Depending on the kind of additives used during the polymerization and on the styrene/divinylbenzene ratio, various different types of polystyrene can be prepared. However, non-cross-linked polystyrene has also been used as a support for organic synthesis [10,16-22], Linear, non-cross-linked polystyrene is soluble in organic solvents such as toluene, pyridine, ethyl acetate, THF, chloroform, or DCM, even at low temperatures, but can be selectively precipitated by the addition of methanol or water. 

Polymyxin B, (Section 16.1.6) is a cyclic heptapeptide with a pendent tripeptide segment that has topical antibiotic properties. The solid-phase synthesis is carried out with appropriate side-chain protections. The linear heptapeptide is removed from the resin and cyclized to yield the polymyxin B,. The synthesis of the peptidomimetic (S)-6-methyloctanoic acid is also outlined.136 ... 

In this method, the cysteine-thioester cyclization generates a cyclic peptide 86a (see Scheme 23) with a Xaa-Cys bond whose thiol moiety is then used for tethering to the core through an S-alkylation reaction.191 The requirement for the cyclization reaction is a linear precursor 84 containing both an N-terminal Cys and a C-terminal thioester. Such a peptide precursor can be conveniently synthesized by a stepwise solid-phase synthesis on a thioester resin 81 using Boc chemistry (Scheme 22). Cleavage by HF after assembly of the peptide sequence will produce the desired precursor with an N-terminal Cys and a C-terminal thioester 84. The crude peptide is then purified by RP-HPLC and the purified unprotected peptide is then circularized in aqueous conditions buffered at pH > 7.0. 

This palladium-catalyzed three-component coupling reaction leading to the formation of aryl-substituted allylic amines was recently adapted to solid-phase synthesis (Scheme 8.23). Amines were chosen to attach to a solid support (Rink resin) in this three-component coupling process and were reacted with a variety of aryl halides and linear or cyclic non-conjugated dienes, the reaction being carried out at 100 °C for two days in the presence of palladium acetate and diisopropylethyl-amine. A wide variety of aryl-substituted allylic amines were then obtained after cleavage from the solid support by trifluoroacetic acid [60],... 

Fig. 10 Solid-phase synthesis of cationic lipids using submonomer (a) [147, 148] and monomer (b) [151, 152] linear assembly...

Nefzi, A., Giulianotti, M Truong, L., Rattan, S Ostresh, J. M and Houghten, R. A., (2002) Solid-phase synthesis of linear ureas tethered to hydantoins and thiohydantoins. / Comb. Chem. 4, 175-178. 

Convergent methods avoid the cumulative disaster of linear synthesis. Access to large peptides can be provided by use of medium-sized peptide segments, easily available by solid-phase synthesis. There are two distinct approaches. One involves the synthesis and puri-... 

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