Instrumentation fluorescence decay

With the development of new instrumental techniques, much new information on the size and shape of aqueous micelles has become available. The inceptive description of the micelle as a spherical agglomerate of 20-100 monomers, 12-30 in radius (JJ, with a liquid hydrocarbon interior, has been considerably refined in recent years by spectroscopic (e.g. nmr, fluorescence decay, quasielastic light-scattering), hydrodynamic (e.g. viscometry, centrifugation) and classical light-scattering and osmometry studies. From these investigations have developed plausible descriptions of the thermodynamic and kinetic states of micellar micro-environments, as well as an appreciation of the plurality of micelle size and shape. 

The lifetime detection techniques are self-referenced in a sense that fluorescence decay is one of the characteristics of the emitter and of its environment and does not depend upon its concentration. Moreover, the results are not sensitive to optical parameters of the instrument, so that the attenuation of the signal in the optical path does not distort it. The light scattering produces also much lesser problems, since the scattered light decays on a very fast time scale and does not interfere with fluorescence decay observed at longer times. 

Because of the underlying photophysics, fluorescence lifetimes are intrinsically short, usually on the order of a few nanoseconds. Detection systems with a high timing resolution are thus required to resolve and quantify the fluorescence decays. Developments in electronics and detector technology have resulted in sophisticated and easy to use equipment with a high time resolution. Fluorescence lifetime spectroscopy has become a popular tool in the past decades, and reliable commercial instrumentation is readily available. 

Figure 6. Fluorescence decay profiles of trans-7,8-dihydroxy-7,8-dihydro-BP and 8,9,10,11-tetrahydro-BA measured at 23 °C with and without native DNA. Taken from refs. 14 and 15. The upper left-hand corner contains an instrument response profile. Emission and excitation wavelengths, lifetimes, and values of x2 obtained from deconvolution of the lifetime data are also given.

The first photoelectric fhiorimeter was described by Jette and West in 1928. The instrument, which used two photoemissive cells, was employed for studying the quantitative effects of electrolytes upon the fluorescence of a series of substances, including quinine sulfate [5], In 1935, Cohen provides a review of the first photoelectric fluorimeters developed until then and describes his own apparatus using a very simple scheme. With the latter he obtained a typical analytical calibration curve, thus confirming the findings of Desha [33], The sensitivity of these photoelectric instruments was limited, and as a result utilization of the photomultiplier tube, invented by Zworykin and Rajchman in 1939 [34], was an important step forward in the development of suitable and more sensitive fluorometers. The pulse fhiorimeter, which can be used for direct measurements of fluorescence decay times and polarization, was developed around 1950, and was initiated by the commercialization of an adequate photomultiplier [35]. 

The time resolution of the instrument is governed not only by the pulse width but also by the electronics and the detector. The linear time response of the TAC is most critical for obtaining accurate fluorescence decays. The response is more linear when the time during which the TAC is in operation and unable to respond to another signal (dead time) is minimized. For this reason, it is better to collect the data in the reverse configuration the fluorescence pulse acts as the start pulse and the corresponding excitation pulse (delayed by an appropriate delay line) as the stop pulse. In this way, only a small fraction of start pulses result in stop pulses and the collection statistics are better. 

The values measured in these two ways should of course be identical and independent of the modulation frequency. This provides two criteria to check whether an instrument is correctly tuned by using a lifetime standard whose fluorescence decay is known to be a single exponential. 

Fig. 6.13. Data obtained by the phase-modulation technique with a Fluorolog tau-3 instrument (Jobin Yvon-Spex) operating with a xenon lamp and a Pockel s cell. Note that because the fluorescence decay is a single exponential, a single appropriate modulation frequency suffices for the lifetime determination. The broad set of frequencies permits control of the proper tuning of the...

Figure 13. Stroboscopic instrument for the determination of fluorescent decays [from...

Fig. 11.5 Measurement of lifetime of anthracene in solution by single photon time correlation technique. Fluorescence decay curve of 8 X10-4 M anthracene in cyclohexane in the absence (A) and presence (B) of 0.41 M CC14. Points experimental data Line best fitting single exponential decay convoluted with instrumental response function (C) Time scale 0.322 nsec per channel. (Ref. 13).

Instruments of this type may also be used quite effectively to evaluate kinetics of time-dependent changes in foods, be they enzymatic or reactive changes of other types. The computerized data-acquisition capabilities of these instruments allow precise measurement of absorbance or fluorescence changes, often over very brief time periods ( milliseconds). This is particularly useful for analysis of fluorescence decay rates, and in measurement of enzymatic activity in situ. A number of enzyme substrates is available commercially which, although non-fluorescent initially, release fluorescent reaction products after hydrolysis by appropriate enzymes. This kinetic approach is a relatively underused capability of computerized microspectrophotometers, but one which has considerable capability for comparing activities in individual cells or cellular components. Fluorescein diacetate, for example, is a non-fluorescent compound which releases intensely fluorescent fluorescein on hydrolysis. This product is readily quantified in individual cells which have high levels of esterase [50]. Changes in surface or internal color of foods may also be evaluated over time by these methods. 

TNP-ATP complex obtained by the single-molecule time-resolved spectroscopy, together with a fluorescence decay curve of TNP-ATP obtained by a bulk measurement. Both curves were well fitted to biexponential functions. The instrument-response function in 195-ps fwhm is also displayed. (B) Representative fluorescence spectrums of two individual enzyme-TNP-ATP complexes showing different emission peaks. A fluorescence spectrum of TNP-ATP obtained from a bulk measurement is also displayed for comparison. All spectrums were normalized to unity at their maximum. (From Ref. 18.)... 

Figure 8.9 Time-resolved fluorescent lifetime analysis of Cy3 attached to double-stranded DNA (Iqbal et al., 2008b). Fluorescent decay curve for Cy3 attached to a 16 bp DNA duplex, showing the experimental data and the instrument response function (IRF), and the fit to three exponential functions (line). The decay curve was generated using time-correlated single-photon counting, after excitation by 200 fs pulses from a titanium sapphire laser at 4.7 MHz.

The operation of an oscilloscope can best be described by reference to Fig. 5, which shows a simplified layout of the controls of a commercial (Tektronix) digital instrument. The signal to be measured is applied to the input connector (BNC) of one of the vertical amplifier channels and must not exceed an upper limit of, typically, 400 volts if the scope input impedance is one megaohm and 5 volts for 50-ohm input impedance. The latter impedance is necessary for signal changes that occur rapidly, such as in the fluorescence decay measurements of Exps. 40 and 44. The lower limit of sensitivity is about 1 mV/division, so preamplification is sometimes needed if very low signal levels are to be measured. 

There has been a considerable decline in the number of papers which deal with the details of techniques of measurement of fluorescence decay. This is no doubt due to the fact that the alternative methods are now essentially well established. Nevertheless a microcomputerized ultrahigh speed transient digitizer and luminescence lifeline instrument has been described . A very useful multiplexed array fluorometer allows simultaneous fluorescence decay at different emission wavelength using single photon timing array detection . Data collection rates could approach that for a repetitive laser pulse system and the technique could be usefully applied to HPLC or microscopy. The power of this equipment has been exemplified by studies on aminotetraphenylporphyrins at emission wavelengths up to 680 nm. The use and performance of the delta function convolution method for the estimation of fluorescence decay parameters has been... 

In this chapter we will outline the mathematics of fluorescence decays, briefly describe the instrumentation used in the mejisurements, and detail our implementation of simplex searching, simulated annealing, and the combination of the two as applied to ligand-protein binding. 

Figure 3. Plots showing instrument response fimction (top plot) and observed fluorescence decay from dansylamide (bottom plot).

By measuring the instrument response function (Figure 3, top) and knowing that the observed fluorescence decay (Figure 3, bottom) is equal to the convolution of the ideal fluorescence decay (Equation (8) or (9)) with the instrument response function, we can construct an expected or calculated fluorescence decay for given fit parameters... 

The practical data analysis techniques for us include iterative methods in which estimates for the parameters are refined imtil we get an acceptable fit. The quality of the fit is judged by how closely the calculated fluorescence decay (generated from the instrument response function and an assumed biexponential decay law) and the observed fluorescence decay match in a least-squares sense. The goodness-of-fit parameter is defined as... 

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