Hydrogen bonding theoretical studies

Yang Y, Zhang W, Gao X (2006) Blue-shifted and red-shifted hydrogen bonds Theoretical study of the CH3CHO -HNO complexes. Int J Quantum Chem 106 1199-1207... 

M. J. Calhorda, Weak hydrogen bonds theoretical studies, Chem. Commun. 801-809 (2000). 

The dependence of stretching vibrations of X—H on the length of the hydrogen bond is studied very well both theoretically and experimentally (see,... 

The Concerted Bifunctional Mechanism. At the end of the 20th century, Noyori and co-workers reported a new hydrogen transfer mechanism in which a metal-hydride participates together with a primary or secondary amine NH bond (38,278,283,298). The hydrogen transfer catalytic activity of the isolated hydride intermediate allowed the authors to propose the outer-sphere mechanism outlined in Figure 93. The key intermediate is the six-membered metallacyle represented in the figure in which the metal-hydride and the NH functionality are interacting with the carbonyl bond. Theoretical studies support this mechanism and explain the encountered enantioselectivity (301,363-365). 

The crystal stmcture of PPT is pseudo-orthorhombic (essentially monoclinic) with a = 0.785/nm b = 0.515/nm c (fiber axis) = 1.28/nm and d = 90°. The molecules are arranged in parallel hydrogen-bonded sheets. There are two chains in a unit cell and the theoretical crystal density is 1.48 g/cm. The observed fiber density is 1.45 g/cm. An interesting property of the dry jet-wet spun fibers is the lateral crystalline order. Based on electron microscopy studies of peeled sections of Kevlar-49, the supramolecular stmcture consists of radially oriented crystaUites. The fiber contains a pleated stmcture along the fiber axis, with a periodicity of 500—600 nm. 

WE Reiher III. Theoretical Studies of Hydrogen Bonding. Ph.D. Thesis, Harvard University, 1985. 

Most studies concerning pyrimidines originate from biochemical questions. Since these systems are dominated by hydrogen-bonding and/or dispersion contributions, methods beyond the Hartree-Fock level are mandatory. The success of quantum chemical studies in this field is impressive and many effects could be explained on the basis of these theoretical investigations. 

It is well estabhshed that sulfur compounds as well as elemental sulfur have the tendency to form long chain molecules. All of these substances can be regarded as derivatives of the hydrogen polysulfanes (or polysulfanes) H2S . Polysulfanes form a long series of homologous chain-like molecules since the number n can assume any value. S-S and S-H bonds are frequently found in chemical and biological systems. Thus, polysulfanes have been the subject of numerous experimental and theoretical studies (for a recent review, see [15]). 

Theoretically, the problem has been attacked by various approaches and on different levels. Simple derivations are connected with the theory of extrathermodynamic relationships and consider a single and simple mechanism of interaction to be a sufficient condition (2, 120). Alternative simple derivations depend on a plurality of mechanisms (4, 121, 122) or a complex mechanism of so called cooperative processes (113), or a particular form of temperature dependence (123). Fundamental studies in the framework of statistical mechanics have been done by Riietschi (96), Ritchie and Sager (124), and Thorn (125). Theories of more limited range of application have been advanced for heterogeneous catalysis (4, 5, 46-48, 122) and for solution enthalpies and entropies (126). However, most theories are concerned with reactions in the condensed phase (6, 127) and assume the controlling factors to be solvent effects (13, 21, 56, 109, 116, 128-130), hydrogen bonding (131), steric (13, 116, 132) and electrostatic (37, 133) effects, and the tunnel effect (4,... 

Detection of the dA N1 and dC N3 adducts may not in one sense be particularly important for DNA based on their central position within the helical conformation and hydrogen bonding network.37,38 Still, the deoxynucleoside studies helped to focus attention on the reversibility of alkylation by QM and provided insight into the reactions of duplex DNA described below in Section 9.3. Reaction at the deoxynucleoside level also provided an essential system for developing a theoretical treatment of QM reaction.50-52 Computations based on density functional theory well rationalized the published results on d A and correctly anticipated the results on dG and dC reviewed above and described in more detail in Chapter 2 (Freccero). 

The water dimer is probably the most intensively studied intermolecular hydrogen bonded system of all. Hence, ample theoretical and experimental data is available for this system,... 

Diercksen, G.H.F. (1971) SCF-MO-LCGO studies on hydrogen bonding. The water dimer. Theoret. Chim. Acta, 21, 335-367. 

Bases stacked rather than hydrogen bonded have also been studied with quantum chemical methods [182, 244-247]. The nature of excited states in these systems has been debated and theoretical calculations are called to decide on the degree of excited state localization or delocalization, as well as the presence and energy of charge transfer states. The experimentally observed hypochromism of DNA compared to its individual bases has been known for decades [248], Accurate quantum chemical calculations are limited in these systems because of their increased size. Many of the reported studies have used TDDFT to calculate excited states of bases stacked with other bases [182, 244, 246, 247], However, one has to be cautious when us-... 

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