Hydrogen bonding parallel sheets

Fig. 1. The basic arrangements of /f-strands in hydrogen-bonded /f-sheets (A) parallel chains, (B) antiparallel chains. Green spheres of different sizes denote side chain groups...

Wool, while naturally existing in the helical form, takes on a pleated sheet-like structure when stretched. If subjected to tension in the direction of the helix axes, the hydrogen bonds parallel to the axes are broken and the structure can be irreversibly elongated to an extent of about 100%. 

Peptide- amphiphile/ micelle Parallel 8-sheet Nearly any sequence with terminal alkylation Hydrophobic aggregation followed by hydrogen bonding Parallel... 

Parallel and antiparallel sheets have different patterns of hydrogen bonding. Antiparallel sheets have unevenly spaced hydrogen bonds per-... 

The supersecondary structure consisting of a P-a-P unit with the hydrogen bonded parallel P-strands forms the basis of many enzymes, especially those that bind nucleotides or related molecules. The strands form a parallel p-sheet. In some cases, there is a linear P-a-P-a-P-... arrangement, but in other cases the P-sheet closes on itself with the last strand hydrogen-bonded to the first. 

The crystal stmcture of PPT is pseudo-orthorhombic (essentially monoclinic) with a = 0.785/nm b = 0.515/nm c (fiber axis) = 1.28/nm and d = 90°. The molecules are arranged in parallel hydrogen-bonded sheets. There are two chains in a unit cell and the theoretical crystal density is 1.48 g/cm. The observed fiber density is 1.45 g/cm. An interesting property of the dry jet-wet spun fibers is the lateral crystalline order. Based on electron microscopy studies of peeled sections of Kevlar-49, the supramolecular stmcture consists of radially oriented crystaUites. The fiber contains a pleated stmcture along the fiber axis, with a periodicity of 500—600 nm. 

Figure 2.5 Schematic illustrations of antiparallel (3 sheets. Beta sheets are the second major element of secondary structure in proteins. The (3 strands are either all antiparallel as in this figure or all parallel or mixed as illustrated in following figures, (a) The extended conformation of a (3 strand. Side chains are shown as purple circles. The orientation of the (3 strand is at right angles to those of (b) and (c). A p strand is schematically illustrated as an arrow, from N to C terminus, (bj Schematic illustration of the hydrogen bond pattern in an antiparallel p sheet. Main-chain NH and O atoms within a p sheet are hydrogen bonded to each other.

Figure 2.6 Parallel p sheet, (a) Schematic diagram showing the hydrogen bond pattern in a parallel p sheet, (b) Ball-and-stlck version of (a). The same color scheme is used as in Figure 2.5c. (c) Schematic diagram illustrating the pleat of a parallel p sheet.

Beta strands can also combine into mixed P sheets with some P strand pairs parallel and some antiparallel. There is a strong bias against mixed P sheets only about 20% of the strands inside the p sheets of known protein structures have parallel bonding on one side and antiparallel bonding on the other. Figure 2.7 illustrates how the hydrogen bonds between the p strands are arranged in a mixed P sheet. 

The interiors of protein molecules contain mainly hydrophobic side chains. The main chain in the interior is arranged in secondary structures to neutralize its polar atoms through hydrogen bonds. There are two main types of secondary structure, a helices and p sheets. Beta sheets can have their strands parallel, antiparallel, or mixed. 

The two peptides form a symmetrical dimer stabilized by four hydrogen bonds (red dashes) and hydrophobic contacts. The two monomers form a four-stranded, anti-parallel pleated sheet. 

Pleated p sheet (Section 27.19) Type of protein secondary structure characterized by hydrogen bonds between NH and C=0 groups of adjacent parallel peptide chains. The individual chains are in an extended zigzag conformation. 

FIGURE6.il The arrangement of hydrogen bonds in (a) parallel and (b) andparallel /3-pleated sheets. 

FIGURE 10.41 (a) Gramicidin forms a double helix in organic solvents a helical dimer is the preferred strnctnre in lipid bilayers. The strnctnre is a head-to-head, left-handed helix, with the carboxy-termini of the two monomers at the ends of the strnctnre. (b) The hydrogen-bonding pattern resembles that of a parallel /3-sheet. 

Figure 26.6 (a) The /3-pleated sheet secondary structure of proteins is stabilized by hydrogen bonds between parallel or antiparallel chains, (b) The structure of concanavalin A, a protein with extensive regions of antiparallel / sheets, shown as flat ribbons. 

Fig. 3.—Parallel packing arrangement of the 2-fold helices of cellulose I (1). (a) Stereo view of two unit cells approximately normal to the ac-plane. The two comer chains (open bonds) in the back, separated by a, form a hydrogen-bonded sheet. The center chain is drawn in filled bonds. All hydrogen bonds are drawn in dashed lines in this and the remaining diagrams, (b) Projection of the unit cell along the c-axis, with a down and b across the page. No hydrogen bonds are present between the comer and center chains.

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