Hydrogen-bond networks

Solubility in Water Alkyl halides and alcohols differ markedly from one another m their solubility m water All alkyl halides are insoluble m water but low molecular weight alcohols (methyl ethyl n propyl and isopropyl) are soluble m water m all pro portions Their ability to participate m mtermolecular hydrogen bonding not only affects the boiling points of alcohols but also enhances their water solubility Hydrogen bonded networks of the type shown m Figure 4 5m which alcohol and water molecules asso ciate with one another replace the alcohol-alcohol and water-water hydrogen bonded networks present m the pure substances... 

Eig. 12. Hydrogen-bonded network of an urea inclusion channel (--hydrogen bonds (90). 

Figure 13.10 Rearrangements of the hydrogen bond network between strands 1, 2, and 3 in the p sheet of Go. as a consequence of the switch from the GDP (blue) to the GTP (green) conformation. Strand P3 pulls away from pi and disrupts two hydrogen bonds in order to bring Gly 199 into contact with the y-phosphate of GTP. As a consequence new hydrogen bonds are formed between P2 and P3. (Adapted from D. Lambright et al.. Nature 369 621-628,...

FIGURE 2.11 Proton jumping via the hydrogen-bonded network of water molecules. 

The mechanism of recognition of most supramolecular entities (such as abiotic receptors) is the formation of several hydrogen bonds. Since heterocyclic tautomers possess both strong HBA and HBD properties (see Sections III,G, V,D,2, and VI,G), they are often used for this purpose. For instance, the hydrogen bond network formed by 5,5 -linked bis(2-pyridones) has been used by Dickert to obtain sensors (96BBG1312). 

The square cell is convenient for a model of water because water is quadrivalent in a hydrogen-bonded network (Figure 3.2). Each face of a cell can model the presence of a lone-pair orbital on an oxygen atom or a hydrogen atom. Kier and Cheng have adopted this platform in studies of water and solution phenomena [5]. In most of those studies, the faces of a cell modeling water were undifferentiated, that is no distinction was made as to which face was a lone pair and which was a hydrogen atom. The reactivity of each water cell was modeled as a consequence of a uniform distribution of structural features around the cell. 

Water is a special liquid that forms unique bonds involving protons between the oxygen atoms of neighboring molecules, the so-called hydrogen bond. The solvation forces are then due not simply to molecular size effects, but also and most importantly to the directional nature of the bond. They can be attractive or hydrophobic (hydration forces between two hydrophobic surfaces) and repulsive or hydrophilic (between two hydrophilic surfaces). These forces arise from the disruption or modification of the hydrogen-bonding network of water by the surfaces. These forces are also found to decay exponentially with distance [6]. 

Stimulated by these observations, Odelius et al. [73] performed molecular dynamic (MD) simulations of water adsorption at the surface of muscovite mica. They found that at monolayer coverage, water forms a fully connected two-dimensional hydrogen-bonded network in epitaxy with the mica lattice, which is stable at room temperature. A model of the calculated structure is shown in Figure 26. The icelike monolayer (actually a warped molecular bilayer) corresponds to what we have called phase-I. The model is in line with the observed hexagonal shape of the boundaries between phase-I and phase-II. Another result of the MD simulations is that no free OH bonds stick out of the surface and that on average the dipole moment of the water molecules points downward toward the surface, giving a ferroelectric character to the water bilayer. 

Water and octane are not alike. Rather than dissolving, octane floats on water. The presence of an octane molecule in the water layer disrupts a portion of the hydrogen-bonding network in water. 

When an alcohol dissolves in water, the nonpolar hydrocarbon part of the alcohol disrupts the hydrogen-bonding network of water. Counterbalancing this solvent dismption, the —OH groups of the alcohol form hydrogen-bonding interactions with water molecules. 

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