Hydride transfer reactions, NADH reaction complex

The catalytic effect of metal ions such as Mg2+ and Zn2+ on the reduction of carbonyl compounds has extensively been studied in connection with the involvement of metal ions in the oxidation-reduction reactions of nicotinamide coenzymes [144-149]. Acceleration effects of Mg2+ on hydride transfer from NADH model compounds to carbonyl compounds have been shown to be ascribed to the catalysis on the initial electron transfer process, which is the rate-determining step of the overall hydride transfer reactions [16,87,149]. The Mg2+ ion has also been shown to accelerate electron transfer from cis-dialkylcobalt(III) complexes to p-ben-zoquinone derivatives [150,151]. In this context, a remarkable catalytic effect of Mg2+ was also found on photoinduced electron transfer reactions from various electron donors to flavin analogs in 1984 [152], The Mg2+ (or Zn2+) ion forms complexes with a flavin analog la and 5-deazaflavins 2a-c with a 1 1 stoichiometry in dry MeCN at 298 K [153] ... 

The effects of Mg + on hydride transfer reactions from a typical NADH model compound, 1-benzyl-1,4-dihydronicotinamide (BNAH), to substrates are complex... 

NAD-linked dehydrogenases remove two hydrogen atoms from their substrates. One of these is transferred as a hydride ion ( II ) to NAD+ the other is released as H+ in the medium (see Fig. 13-15). NADH and NADPH are water-soluble electron carriers that associate reversibly with dehydrogenases. NADH carries electrons from catabolic reactions to their point of entry into the respiratory chain, the NADH dehydrogenase complex described below. NADPH generally supplies electrons to anabolic reactions. Cells maintain separate pools of NADPH and NADH, with different redox potentials. This is accomplished by holding the ratios of [reduced form]/[oxidized form] relatively high for NADPH and relatively low for NADH. Neither NADH nor NADPH can cross the inner mitochondrial membrane, but the electrons they carry can be shuttled across indirectly, as we shall see. 

FIGURE 19-9 IMADH ubiquinone oxidoreductase (Complex I). Complex I catalyzes the transfer of a hydride ion from NADH to FMN, from which two electrons pass through a series of Fe-S centers to the iron-sulfur protein N-2 in the matrix arm of the complex. Electron transfer from N-2 to ubiquinone on the membrane arm forms QH2, which diffuses into the lipid bilayer. This electron transfer also drives the expulsion from the matrix of four protons per pair of electrons. The detailed mechanism that couples electron and proton transfer in Complex I is not yet known, but probably involves a Q cycle similar to that in Complex III in which QH2 participates twice per electron pair (see Fig. 19-12). Proton flux produces an electrochemical potential across the inner mitochondrial membrane (N side negative, P side positive), which conserves some of the energy released by the electron-transfer reactions. This electrochemical potential drives ATP synthesis. 

The chemistry of flavins is complex, a fact that is reflected in the uncertainity that has accompanied efforts to understand mechanisms. For flavoproteins at least four mechanistic possibilities must be considered.1533 233 (a) A reasonable hydride-transfer mechanism can be written for flavoprotein dehydrogenases (Eq. 15-23). The hydride ion is donated at N-5 and a proton is accepted at N-l. The oxidation of alcohols, amines, ketones, and reduced pyridine nucleotides can all be visualized in this way. Support for such a mechanism came from study of the nonenzymatic oxidation of NADH by flavins, a reaction that occurs at moderate speed in water at room temperature. A variety of flavins and dihydropyridine derivatives have been studied, and the electronic effects observed for the reaction are compatible with the hydride ion mecha-nism.234 236... 

The enzyme-product complexes of the yeast enzyme dissociate rapidly so that the chemical steps are rate-determining.31 This permits the measurement of kinetic isotope effects on the chemical steps of this reaction from the steady state kinetics. It is found that the oxidation of deuterated alcohols RCD2OH and the reduction of benzaldehydes by deuterated NADH (i.e., NADD) are significantly slower than the reactions with the normal isotope (kn/kD = 3 to 5).21,31 This shows that hydride (or deuteride) transfer occurs in the rate-determining step of the reaction. The rate constants of the hydride transfer steps for the horse liver enzyme have been measured from pre-steady state kinetics and found to give the same isotope effects.32,33 Kinetic and kinetic isotope effect data are reviewed in reference 34 and the effects of quantum mechanical tunneling in reference 35. 

ADH features another catalytic triad, Ser-Tyr-Lys. Whereas the liver ADH kinetic mechanism is highly ordered, coenzyme associating first and dissociating last, the yeast ADH mechanism is largely random. In both cases, the actual chemical reaction is a hydride transfer. In the oxidation of secondary alcohols by Drosophila ADH (DADH), the release of NADH from the enzyme-NADH complex is the rate-limiting step, so vmax is independent of the chemical nature of the alcohol. With primary alcohols, as vmax is much lower and depends on the nature of alcohol, Theorell-Chance kinetics are not observed and the rate-limiting step is the chemical interconversion from alcohol to aldehyde. 

Pre-steady-state kinetic studies established that the appearance of the NADH chromophore on addition of substrate was a two-step process, and these steps can now be identified as closure of the active site and hydride transfer. This study indicated that the on-enzyme equilibrium for addition of water or homocysteine to the enone was close to unity (and the value in free solution), whereas the equilibrium for oxidation of NAD by bound adenosine was 10 times more favourable than in free solution. The focusing of the catalytic power of the enzyme on the oxidation step avoids the formation of abortive complexes by hydride transfer between enone and NADH, yielding 4,5-dehydroadenosine and NAD ". This happens about 10 " times faster than productive hydride transfer at the beginning and end of the catalytic cycle, with the slow rate (close to that of model reactions) apparently arising from a conformationally modulated increase in the distance the hydride has to be transferred. 

The more usual reactivity of NADH in functioning as a hydride donor has led to the modified proposal that hydride transfer to a Fe -NO" " complex would form HNO coordinated to the heme. The reaction of NO with this species would form N2O and regenerate the ferric heme site for further catalysis. 

The formal transfer of hydride is a fundamental reaction in biological catalysis. The Re formyl complex GpRe(NO)(GO)(GHO), the hydricity of which was determined by equilibrium measurements (Equation (25)), engaged in a reversible hydride transfer with an NAD/NADH model system, BzNAD /BzNADH (Equation (31)). 

Argl74) to facilitate stabilizing interactions with the NAAD pyrophosphate group. The C4 atom of the nicotinic acid ring moiety of NAAD is located above the heme plane at a distance of only 4.2 A from the heme iron, and (by comparison with the crystal stracture of the NO complex of the WT CYP55A1) irmnediately adjacent to the rritric oxide (Fig. 6.33) [328,618]. Thus, structural data indicate that there should be direct reduction of the iron-boimd NO molecule by hydride transfer (from the pro-i side of NADH in the natural reaction) to form the reactive (likely ferric-hydroxyl-amine radical) species that then goes on to react with a second molecule of NO to generate the N2O product (and release water and NAD ). 

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