Hamiltonian boundary

The diabatic LHSFs are not allowed to diverge anywhere on the half-sphere of fixed radius p. This boundary condition furnishes the quantum numhers n - and each of which is 2D since the reference Hamiltonian hj has two angular degrees of freedom. The superscripts n(, Q in Eq. (95), with n refering to the union of and indicate that the number of linearly independent solutions of Eqs. (94) is equal to the number of diabatic LHSFs used in the expansions of Eq. (95). 

For the kind of potentials that arise in atomic and molecular structure, the Hamiltonian H is a Hermitian operator that is bounded from below (i.e., it has a lowest eigenvalue). Because it is Hermitian, it possesses a complete set of orthonormal eigenfunctions ( /j Any function spin variables on which H operates and obeys the same boundary conditions that the ( /j obey can be expanded in this complete set... 

In these eases, one says that a linear variational ealeulation is being performed. The set of funetions Oj are usually eonstrueted to obey all of the boundary eonditions that the exaet state E obeys, to be funetions of the the same eoordinates as E, and to be of the same spatial and spin symmetry as E. Beyond these eonditions, the Oj are nothing more than members of a set of funetions that are eonvenient to deal with (e.g., eonvenient to evaluate Hamiltonian matrix elements I>i H j>) and that ean, in prineiple, be made eomplete if more and more sueh funetions are ineluded. 

The location of the quantum/classical boundary across a covalent bond also has implications for the energy terms evaluated in the Emm term. Classical energy terms that involve only quantum atoms are not evaluated. These are accounted for by the quantum Hamiltonian. Classical energy terms that include at least one classical atom are evaluated. Referring to Figure 2, the Ca—Cp bond term the N — Ca—Cp, C — Ca—Cp, Ha— Ca—Cp, Ca—Cp — Hpi, and Ca—Cp — Hp2 angle tenns and the proper dihedral terms involving a classical atom are all included. 

The use of QM-MD as opposed to QM-MM minimization techniques is computationally intensive and thus precluded the use of an ab initio or density functional method for the quantum region. This study was performed with an AMi Hamiltonian, and the first step of the dephosphorylation reaction was studied (see Fig. 4). Because of the important role that phosphorus has in biological systems [62], phosphatase reactions have been studied extensively [63]. From experimental data it is believed that Cys-i2 and Asp-i29 residues are involved in the first step of the dephosphorylation reaction of BPTP [64,65]. Alaliambra et al. [30] included the side chains of the phosphorylated tyrosine, Cys-i2, and Asp-i 29 in the quantum region, with link atoms used at the quantum/classical boundaries. In this study the protein was not truncated and was surrounded with a 24 A radius sphere of water molecules. Stochastic boundary methods were applied [66]. 

Variational calculus, Dreyfus (1962), may be employed to obtain a set of differential equations with certain boundary condition properties, known as the Euler-Lagrange equations. The maximum principle of Pontryagin (1962) can also be applied to provide the same boundary conditions by using a Hamiltonian function. 

Here we review the properties of the model in the mean field theory [328] of the system with the quantum APR Hamiltonian (41). This consists of considering a single quantum rotator in the mean field of its six nearest neighbors and finding a self-consistent condition for the order parameter. Solving the latter condition, the phase boundary and also the order of the transition can be obtained. The mean-field approximation is similar in spirit to that used in Refs. 340,341 for the case of 3D rotators. 

The behavior of an adsorbate on a single patch of size L has been represented by the familiar two-dimensional lattice gas model Hamiltonian with the added term resulting from the presence of a boundary field ... 

It is seen that the symmetry of the non-coulombic non-local interaction in the bulk phase forces the symmetry of the localized interaction with the wall. If we omitted the surface Hamiltonian and set / = 0 we would still obtain the boundary condition setting the gradient of the overall ionic density to zero. The boundary condition due to electrostatics is given by... 

This result holds equally well, of course, when R happens to be the operator representing the entropy of an ensemble. Both Tr Wx In Wx and Tr WN In WN are invariant under unitary transformations, and so have no time dependence arising from the Schrodinger equation. This implies a paradox with the second law of thermodynamics in that apparently no increase in entropy can occur in an equilibrium isolated system. This paradox has been resolved by observing that no real laboratory system can in fact be conceived in which the hamiltonian is truly independent of time the uncertainty principle allows virtual fluctuations of the hamiltonian with time at all boundaries that are used to define the configuration and isolate the system, and it is easy to prove that such fluctuations necessarily increase the entropy.30... 

One may attempt to approximate to such an experimental situation by considering a subsystem with small dimensions in the direction of the flow, so that a single temperature may be sufficiently precise in describing it. In this model one would have to provide a time-dependent hamiltonian operating in such a way as to feed energy into the system at one boundary and to remove energy from the other boundary. We would therefore be obliged to discuss systems with hamiltonians that are explicitly functions of time, and also located on the boundaries of the macrosystem. 

A physically acceptable theory of electrical resistance, or of heat conductivity, must contain a discussion of the explicitly time-dependent hamiltonian needed to supply the current at one boundary and remove it at another boundary of the macrosystem. Lacking this feature, recent theories of such transport phenomena contain no mechanism for irreversible entropy increase, and can be of little more than heuristic value. 

Stated in still other words this means that for any trial density p(r) - which satisfies the necessary boundary conditions such as p( ) - 0, J p( ) dr = N, and which is associated with some external potential Vext - the energy obtained from the functional given in equation (4-6) represents an upper bound to the true ground state energy E0. E0 results if and only if the exact ground state density is inserted into equation (4-8). The proof of the inequality (4-11) is simple since it makes use of the variational principle established for wave functions as detailed in Chapter 1. We recall that any trial density p(r) defines its own Hamiltonian H and hence its own wave function. This wave function can now be taken as the trial wave function for the Hamiltonian generated from the true external potential Vext. Thus, we arrive at... 

Associated with the pole of the S-matrix is a Seigert state, I-Ves, which has purely outgoing boundary conditions and satisfies (with some caveats) the equation, // I res = z les,H being the system Hamiltonian.44 If a square integrable approximation to I res is constructed, then its time evolution, k . (/,), wiH exhibit pure exponential decay after a transient induction period. Of course any L2 state will show quadratic, and hence non-exponential, decay at short times since... 

Hqm is the Hamiltonian of the QM region and might be based on semiempirical, ah initio molecular orbital or density functional theory (DFT) methods. Hqm/mm represents the interactions between the QM and MM regions, Hmm is the Hamiltonian of the purely MM region, and Hboundary is Hamiltonian for the boundary of the system, if this contribution is included. The corresponding total energy ( tot) of the QM/MM system is ... 

The solute-solvent system, from the physical point of view, is nothing but a system that can be decomposed in a determined collection of electrons and nuclei. In the many-body representation, in principle, solving the global time-dependent Schrodinger equation with appropriate boundary conditions would yield a complete description for all measurable properties [47], This equation requires a definition of the total Hamiltonian in coordinate representation H(r,X), where r is the position vector operator for all electrons in the sample, and X is the position vector operator of the nuclei. In molecular quantum mechanics, as it is used in this section, H(r,X) is the Coulomb Hamiltonian[46]. The global wave function A(r,X,t) is obtained as a solution of the equation ... 

Boundary Conditions via a Symmetrically Damped, Hermitian Hamiltonian Operator. 

A semiclassical description is well established when both the Hamilton operator of the system and the quantity to be calculated have a well-defined classical analog. For example, there exist several semiclassical methods for calculating the vibrational autocorrelation function on a single excited electronic surface, the Fourier transform of which yields the Franck-Condon spectmm [108, 109, 150, 244]. In particular, semiclassical methods based on the initial-value representation of the semiclassical propagator [104-111, 245-248], which circumvent the cumbersome root-search problem in boundary-value-based semiclassical methods, have been successfully applied to a variety of systems (see, for example, Refs. 110, 111, 161, and 249 and references therein). The mapping procedure introduced in Section VI results in a quantum-mechanical Hamiltonian with a well-defined classical limit, and therefore it... 

The radial functions Pmi r) and Qn ir) may be obtained by numerical integration [16,17] or by expansion in a basis (for recent reviews see [18,19]). Since the Dirac Hamiltonian is not bound from below, failure to observe correct boundary conditions leads to variational collapse [20,21], where admixture of negative-energy solutions may yield energies much below experimental. To avoid this failure, the basis sets used for expanding the large and small components must maintain kinetic balance [22,23]. 

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