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Genotyping nucleotide polymorphisms

Allele variant forms oftheDNA sequence at a specified locus. For example, alleles at a single-nucleotide polymorphism (SNP) are characterized by the nucleotide that is changing. The combination of two alleles at a locus constitutes a genotype. [Pg.58]

Chen, X. and Kwok, P. Y. (1999). Homogeneous genotyping assays for single nucleotide polymorphisms with fluorescence resonance energy transfer detection. Genet. Anal. 14, 157-63. [Pg.64]

Armstrong, B. et al. (2000) Suspension arrays for high throughput, multiplexed single nucleotide polymorphism genotyping. Cytometry 40, 102-108. [Pg.1044]

Zhong, X., Reynolds, R., Kidd, J.R., Kidd, K.K., Jenison, R., Marlar, R.A., and Ward, D.C. (2003) Single-nucleotide polymorphism genotyping on optical thin-film biosensor chips. PNAS 100, 11559-11564. [Pg.1132]

Wang, D.G., et al., "Large-Scale Identification, Mapping, and Genotyping of Single-Nucleotide Polymorphisms in the Human Genome," Science 280, 1077-1082 (1998). [Pg.58]

E. S. (1998). Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 280, 1077-1082. [Pg.437]

Blondal T, Waage BG, Smarason SV, Jonsson F, Fjalldal SB, et al. 2003. A novel MALDI-TOF based methodology for genotyping single nucleotide polymorphisms. Nucleic Acids Res 15 el55. [Pg.169]

Misra A, Hong JY, Kim S (2007) Multiplex genotyping of cytochrome p450 single-nucleotide polymorphisms by use of MALDI-TOF mass spectrometry. Clin Chem 53 933-939 Moon YJ, Zhang S, Brazeau DA, Morris ME (2007) Effects of the flavonoid biochanin A on gene expression in primary human hepatocytes and human intestinal cells. Mol Nutr Food Res 51 317-323... [Pg.255]

Keywords Bioinformatics database disease dmg function genotype interaction pathway pharmacogenomics phenotype single-nucleotide polymorphism (SNP) software stmcture systems biology. [Pg.3]

Kwok, P. Y. (2001) Methods for genotyping single nucleotide polymorphisms. Anna Rev Genomics Hum Genet. 2, 235-258. [Pg.446]

Nannya Y, Sanada M, Nakazaki K et al. A robust algorithm for copy number detection using high-density oligonucleotide single-nucleotide polymorphism genotyping arrays. Cancer Res 2005 65 6071-6079. [Pg.86]

Lips EH, Dierssen JW, van Eijk R et al. Reliable high-throughput genotyping and loss-of-heterozygosity detection in formalin-fixed, paraffin-embedded tumors using single-nucleotide polymorphism arrays. Cancer 2005 65 10188-10191. [Pg.88]

Gunderson KL, Kuhn KM, Steemers FJ et al. Whole-genome genotyping of haplotype tag single nucleotide polymorphisms. Pharmacogenomics 2006 7 641-648. [Pg.88]

Prince JA, Feuk L, Howell WM, Jobs M, Emahazion T, Blennow K, Brookes AJ. Robust and accurate single nucleotide polymorphism genotyping by dynamic allele-specific hybridization (DASH) design criteria and assay validation. Genome Res 2001 11 152-162. [Pg.312]

Iannone MA, Taylor JD, Chen J, Li MS, Rivers P, Slentz-Kesler KA, Weiner MP. Multiplexed single nucleotide polymorphism genotyping by oligonucleotide ligation and flow cytometry. Cytometry 2000 39 131-140. [Pg.312]


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