Fluctuation dipole model

It must also be stressed that computational times in MD simulations are increased by a factor 1.1 with TIP4Pfq or SPCfq potentials, while for fluctuating dipole models, as the seven-site TIP4Pfd, there is a fourfold increase [92]. 

This perturbation method is claimed to be more efficient than the fluctuating dipole method, at least for certain water models [Alper and Levy 1989], but it is important to ensure that the polarisation (P) is linear in the electric field strength to avoid problems with dielectric saturation. 

The total electric field, E, is composed of the external electric field from the permanent charges E° and the contribution from other induced dipoles. This is the basis of most polarizable force fields currently being developed for biomolecular simulations. In the present chapter an overview of the formalisms most commonly used for MM force fields will be presented. It should be emphasized that this chapter is not meant to provide a broad overview of the field but rather focuses on the formalisms of the induced dipole, classical Drude oscillator and fluctuating charge models and their development in the context of providing a practical polarization model for molecular simulations of biological macromolecules [12-21], While references to works in which the different methods have been developed and applied are included throughout the text, the major discussion of the implementation of these models focuses... 

Thole s polarizability parameters were selected to optimize the molecular polarizabilities for a set of 16 molecules. The method was later expanded to fit 52 molecules [146], It must be emphasized that this electric-field damping method is totally independent of the polarization scheme used. For the Drude and fluctuating charge methods only /i(r) is required, whereas for methods based on induced dipoles both /i(r) and /2(r) are necessary. In the context of the induced dipole model other models were proposed since the formula of Thole does not provide enough attenuation. For example, in Ref. [152] the field is evaluated using... 

Stern HA, Rittner F, Berne BJ, Friesner RA (2001) Combined fluctuating charge and polarizable dipole models application to a five-site water potential function. J Chem Phys 115(5) 2237-2251... 

Schmitz et al (31) have proposed that the discrepancy between QLS and tracer diffusion measurements can be reconciled by considering the effects of small ions on the dynamics and scattering power of the polyelectrolyte. In this model, the slow mode arises from the formation of "temporal aggregates . These arise as the result of a balance between attractive fluctuating dipole forces coming from the sharing of small ions by several polyions, and repulsive electrostatic and Brownian diffusion forces. This concept is attractive, but needs to be formulated quantitatively before it can be adequately tested. 

One feature of the semiempirical models is that because the polarization is described by a set of coefficients that have a normalization condition, for example, Eq. [69], there will be no polarization catastrophe like there can be with dipole polarizable or fluctuating charge models. With a finite basis set, the polarization response is limited and can become only as large as the state with the largest dipole moment. 

Combined Fluctuating-Charge and Polarizable Dipole Models Application to a Five-Site Water Potential Function. 

Almost all the formalism and the approximation schemes of Sections II and III have a natural extension to systems of polarizable dipolar particles, but the precise details of the extension depend on the way polarizability is introduced into the Hamiltonian. We refer to the two quite distinct Hamiltonian models that have been most thoroughly developed in this context as the constant-polarizability model and the fluctuating-polarizability model. The dielectric behavior of the former was first systematically investigated from a statistical mechanical viewpoint by Kirkwood and by Yvon, who considered the model almost exclusively in the absence of permanent dipole moments. (Kirkwood S subsequently pioneered an exact formulation of the statistical mechanics of polar molecules, but largely as a separate enterprise that did not attempt to treat the polarizability exactly.) The general case of polar-polarizable particles remained only very partially developed ... 

The polarizabilities are treated as parameters depending on the atom type, and can be determined by induced dipole moments or fluctuating charge models [17, 155]. 

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