Flavin structure

Reduction of flavin by two electrons yields the 1,5-dihydroflavin (Scheme 3), often called reduced flavin . Since isomeric two-electron reduced flavin structures are known (cf. below), the term reduced flavin should be avoided unless defined to prevent misunderstanding. From all flavin species possible in a redox reaction the solution of 1,5-dihydroflavin is, in contrast to that of some isomeric compounds, devoid of a stront colour but not colourless as indicated by the term leucoflavin , which is still used (Table 4). The only true colourless species is (77). Because of the very high oxygen-sensitivity of 1,5-dihydroflavin its chemical and physical properties were investigated only recently Long before crystallographic data on flavins were available, conclusions were drawn from the molar extinction coefficient at 450 nm of 1,5-dihydroflavins with respect to the planarity of the molecules. From the data presented in Table 5 it was proposed that anionic... 

The structure of the flavin was studied, and the new flavin structures (N,N,N-1,3,S-trialkyl) were compared with those previously used (N,N,N-3,5,10-trialkyl). It was found that the new flavins were between one and two orders of magnitude faster than the previously used flavins. 

Oxidation of P-nicotinamide adenine dinucleotide (NADH) to NAD+ has attracted much interest from the viewpoint of its role in biosensors reactions. It has been reported that several quinone derivatives and polymerized redox dyes, such as phenoxazine and phenothiazine derivatives, possess catalytic activities for the oxidation of NADH and have been used for dehydrogenase biosensors development [1, 2]. Flavins (contain in chemical structure isoalloxazine ring) are the prosthetic groups responsible for NAD+/NADH conversion in the active sites of some dehydrogenase enzymes. Upon the electropolymerization of flavin derivatives, the effective catalysts of NAD+/NADH regeneration, which mimic the NADH-dehydrogenase activity, would be synthesized [3]. 

The first structure, flavodoxin (Figure 4.14a), has one such position, between strands 1 and 3. The connection from strand 1 goes to the right and that from strand 3 to the left. In the schematic diagram in Figure 4.14a we can see that the corresponding a helices are on opposite sides of the p sheet. The loops from these two p strands, 1 and 3, to their respective a helices form the major part of the binding cleft for the coenzyme FMN (flavin mononucleotide). 

Several classes of vitamins are related to, or are precursors of, coenzymes that contain adenine nucleotides as part of their structure. These coenzymes include the flavin dinucleotides, the pyridine dinucleotides, and coenzyme A. The adenine nucleotide portion of these coenzymes does not participate actively in the reactions of these coenzymes rather, it enables the proper enzymes to recognize the coenzyme. Specifically, the adenine nucleotide greatly increases both the affinity and the speeifieity of the coenzyme for its site on the enzyme, owing to its numerous sites for hydrogen bonding, and also the hydrophobic and ionic bonding possibilities it brings to the coenzyme structure. 

Riboflavin, or vitamin B2, is a constituent and precursor of both riboflavin 5 -phosphate, also known as flavin mononucleotide (FMN), and flavin adenine dinucleotide (FAD). The name riboflavin is a synthesis of the names for the molecule s component parts, ribitol and flavin. The structures of riboflavin. 

This thiol-disulfide interconversion is a key part of numerous biological processes. WeTJ see in Chapter 26, for instance, that disulfide formation is involved in defining the structure and three-dimensional conformations of proteins, where disulfide "bridges" often form cross-links between q steine amino acid units in the protein chains. Disulfide formation is also involved in the process by which cells protect themselves from oxidative degradation. A cellular component called glutathione removes potentially harmful oxidants and is itself oxidized to glutathione disulfide in the process. Reduction back to the thiol requires the coenzyme flavin adenine dinucleotide (reduced), abbreviated FADH2. 

Flavin adenine dinucleotide (FAD) Scheme 10.15 Chemical structures of FMN and FAD. 

Like the examples above, dihydroxyacetanilide epoxidase (DHAE) uses an olefin as the substrate for epoxidation. Its mechanism, however, is fundamentally different from those of cytochrome P450 or flavin-dependent enzymes. Dihydroxyacetanilide is an intermediate in the biosynthesis of the epoxyquinones LL-C10037a, an antitumor agent produced by the actinomycete Streptomyces LL-C10037 [75, 76], and MM14201, an antibiotic produced by Streptomyces MPP 3051 (Scheme 10.20) [77]. The main structural difference between the two antibiotics lies in the opposite stereochemistry of the oxirane ring. 

Ghisla, S., Entsch, H., Massey, V., and Husein, M. (1977). On the structure of flavin-oxygen intermediates involved in enzymic reactions. Eur. J. Biochem. 76 139-148. 

Vitamin B2. Figure 2 Structure of flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). 

D. gigas AOR was the first Mo-pterin-containing protein whose 3D structure was solved. From D. desulfuricans, a homologous AOR (MOD) was purified, characterized, and crystallized. Both proteins are homodimers with-100 kDa subunits and contain one Mo-pterin site (MCD-cofactor) and two [2Fe-2S] clusters. Flavin moieties are not found. The visible absorption spectrum of the proteins (absorption wavelengths, extinction coefficients, and optical ratios at characteristic wavelengths) are similar to those observed for the deflavo-forms of... 

FIGURE 10.1 The structural formula of riboflavin and partial structures of riboflavin compounds. The latter show only those portions of the molecule that differ from riboflavin. 1 — Riboflavin (RF), 2 — flavin mononucleotide or 5 -riboflavin monophosphate (FMN or 5 -FMN), 3 — flavin adenine dinucleotide (FAD). 

Incorporation of a flavin electron donor and a thymine dimer acceptor into DNA double strands was achieved as depicted in Scheme 5 using a complex phosphoramidite/H-phosphonate/phosphoramidite DNA synthesis protocol. For the preparation of a flavin-base, which fits well into a DNA double strand structure, riboflavin was reacted with benzaldehyde-dimethylacetale to rigidify the ribityl-chain as a part of a 1,3-dioxane substructure [49]. The benzacetal-protected flavin was finally converted into the 5 -dimethoxytri-tyl-protected-3 -H-phosphonate ready for the incorporation into DNA using machine assisted DNA synthesis (Scheme 5a). For the cyclobutane pyrimidine dimer acceptor, a formacetal-linked thymine dimer phosphoramidite was prepared, which was found to be accessible in large quantities [50]. Both the flavin base and the formacetal-linked thymidine dimer, were finally incorporated into DNA strands like 7-12 (Scheme 5c). As depicted in... 

Crosson, S. and K. Moffat (2001). Structure of a flavin-binding plant photoreceptor domain Insights into light-mediated signal transduction. Proc Natl Acad Sci 98 2995-3000. 

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