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Entropic, entropy

The thermodynamic properties that we have considered so far, such as the internal energy, the pressure and the heat capacity are collectively known as the mechanical properties and can be routinely obtained from a Monte Carlo or molecular dynamics simulation. Other thermodynamic properties are difficult to determine accurately without resorting to special techniques. These are the so-called entropic or thermal properties the free energy, the chemical potential and the entropy itself. The difference between the mechanical emd thermal properties is that the mechanical properties are related to the derivative of the partition function whereas the thermal properties are directly related to the partition function itself. To illustrate the difference between these two classes of properties, let us consider the internal energy, U, and the Fielmholtz free energy, A. These are related to the partition function by ... [Pg.327]

Water-soluble globular proteins usually have an interior composed almost entirely of non polar, hydrophobic amino acids such as phenylalanine, tryptophan, valine and leucine witl polar and charged amino acids such as lysine and arginine located on the surface of thi molecule. This packing of hydrophobic residues is a consequence of the hydrophobic effeci which is the most important factor that contributes to protein stability. The molecula basis for the hydrophobic effect continues to be the subject of some debate but is general considered to be entropic in origin. Moreover, it is the entropy change of the solvent that i... [Pg.531]

To conclude this section let us note that already, with this very simple model, we find a variety of behaviors. There is a clear effect of the asymmetry of the ions. We have obtained a simple description of the role of the major constituents of the phenomena—coulombic interaction, ideal entropy, and specific interaction. In the Lie group invariant (78) Coulombic attraction leads to the term -cr /2. Ideal entropy yields a contribution proportional to the kinetic pressure 2 g +g ) and the specific part yields a contribution which retains the bilinear form a g +a g g + a g. At high charge densities the asymptotic behavior is determined by the opposition of the coulombic and specific non-coulombic contributions. At low charge densities the entropic contribution is important and, in the case of a totally symmetric electrolyte, the effect of the specific non-coulombic interaction is cancelled so that the behavior of the system is determined by coulombic and entropic contributions. [Pg.835]

For the phosphoric anhydrides, and for most of the high-energy compounds discussed here, there is an additional entropic contribution to the free energy of hydrolysis. Most of the hydrolysis reactions of Table 3.3 result in an increase in the number of molecules in solution. As shown in Figure 3.11, the hydrolysis of ATP (as pH values above 7) creates three species—ADP, inorganic phosphate (Pi), and a hydrogen ion—from only two reactants (ATP and HgO). The entropy of the solution increases because the more particles, the more disordered the system. (This effect is ionization-dependent because, at low pH, the... [Pg.74]

Entropy is often described as a measure of disorder or randomness. While useful, these terms are subjective and should be used cautiously. It is better to think about entropic changes in terms of the change in the number of microstates of the system. Microstates are different ways in which molecules can be distributed. An increase in the number of possible microstates (i.e., disorder) results in an increase of entropy. Entropy treats tine randomness factor quantitatively. Rudolf Clausius gave it the symbol S for no particular reason. In general, the more random the state, the larger the number of its possible microstates, the more probable the state, thus the greater its entropy. [Pg.453]

In exploring the entropic difference between a given enzyme and its reference solvent cage, we should consider the dependence of the activation barrier on the activation entropy using the relationship... [Pg.217]

The entropic hypothesis seems at first sight to gain strong support from experiments with model compounds of the type listed in Table 9.1. These compounds show a huge rate acceleration when the number of degrees of freedom (i.e., rotation around different bonds) is restricted. Such model compounds have been used repeatedly in attempts to estimate entropic effects in enzyme catalysis. Unfortunately, the information from the available model compounds is not directly transferable to the relevant enzymatic reaction since the observed changes in rate constant reflect interrelated factors (e.g., strain and entropy), which cannot be separated in a unique way by simple experiments. Apparently, model compounds do provide very useful means for verification and calibration of reaction-potential surfaces... [Pg.221]

The main problem is to find the free energy of the real interface with nonlocal energetic and entropic effects. For a general multicomponent interface the minimization of the nonlocal HS-B2-functional is a nontrivial numerical problem. Fortunately, the variational nature of the problem lends itself to a stepwise solution where simple para-metrization of the density profiles through the interface upon integration of the functional yields the free energy as a function of the parameters. In fact, if we take the profile to be a step function as in the case of local free energy then with local entropy we get the result... [Pg.105]


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Entrop

Entropic

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