Conformational enthalpy

Bonzom et al., 1997 Corey et al., 1983 Corey et al., 1979 Leach and Front, 1990 Rabinovich and Ripatti, 1991 Rich, 1993 Wilson et al., 1988). These computational studies of AA have primarily found looped or back-folded conformations to be low-energy conformers of AA. Rich conducted a quenched MD smdy of AA in vacuo (Rich, 1993). The two lowest enthalpy conformers found for AA were J-shaped conformers in which the carboxylic acid group is in close proximity to the C14—C15 Jt bond. This same J-shape was reported by Corey and co-workers (1983) as one type of low-energy minimum identified in their conformational analysis of AA. Corey suggested that such a J-shaped conformation in solution would be energetically favorable and would be consistent with the chemistry of peroxyarachidoiuc acid for which an internal epoxidation leads to 14, 15-epoxyarachidonic acid (Corey et al., 1979). 

The object of this part of the project is to determine the energy ("enthalpy) levels in each the three con formers and so to determine the composition of the equilibrium conformational mixture. That having been done for the cis isomer, the procedure is repeated for the trans isomer. 

The consistent force field (CFF) was developed to yield consistent accuracy of results for conformations, vibrational spectra, strain energy, and vibrational enthalpy of proteins. There are several variations on this, such as the Ure-Bradley version (UBCFF), a valence version (CVFF), and Lynghy CFF. The quantum mechanically parameterized force field (QMFF) was parameterized from ah initio results. CFF93 is a rescaling of QMFF to reproduce experimental results. These force fields use five to six valence terms, one of which is an electrostatic term, and four to six cross terms. 

At low concentrations, adsorption is a single-chain phenomenon. The adsorption takes place when the enthalpy gain by the monomer-surface contact with respect to the monomer-solvent contact surpasses the loss of the conformational entropy. In a good solvent the adsorption is not likely unless there is a specific interaction between monomers and the surface. At high concentrations, however, interactions between monomers dominate the free energy of the solution. The adsorption takes place when the enthalpy gain by the mono-... 

The interpretation of these results is, however, problematic since no data on the absolute enthalpy and entropy of the respective triple helix and coiled state are available. Though it may be taken as an established fact that the entropy of conformation of a (Pro-Pro-Gly) coil is lower than in the case of a (Pro-Ala-Gly)n coil, we are not sure whether the entropy of the triple helix depends on the imino acid content. 

An increased yield stress is required [62] in order to reverse the unfavourable conformations of the molecular chains that develop during annealing. This explanation is supported by the energy changes observed in annealed polymers. The enthalpy difference, as determined by DSC was AH = 1.8 J/g (Sect. 4.2), whereas the additional work required for yielding in an annealed sample was... 

Polymerization of 4-bromo-6,8-dioxabicyclo[3.2.1 ]octane 2 7 in dichloromethane solution at —78 °C with phosphorus pentafluoride as initiator gave a 60% yield of polymer having an inherent viscosity of 0.10 dl/g1. Although it is not described explicitly, the monomer used seems to be a mixture of the stereoisomers, 7 7a and 17b, in which the bromine atom is oriented trans and cis, respectively, to the five-membered ring of the bicyclic structure. Recently, the present authors found that pure 17b was very reluctant to polymerize under similar conditions. This is understandable in terms of a smaller enthalpy change from 17b to its polymer compared with that for 17a. In the monomeric states, 17b is less strained than 17a on account of the equatorial orientation of the bromine atom in the former, whereas in the polymeric states, the polymer from 17b is energetically less stable than that from 17a, because the former takes a conformation in which the bromine atom occupies the axial positioa Its flipped conformation would be even more unstable, because the stabilization by the anomeric effect is lost, in addition to the axial orientation of the methylene group. 

Table 17 contains the enthalpies of activation and reaction for the three propagation steps in the gas phase and in solution. They were calculated by using classical cations possessing all-trans conformation. 

Molecular mechanics (also known diS force-field calculations) is a method for the calculation of conformational geometries. It is used to calculate bond angles and distances, as well as total potential energies, for each conformation of a molecule. Steric enthalpy can be calculated as well. Molecular orbital calculations (p. 34) can also give such information, but molecular mechanics is generally easier, cheaper (requires less computer time), and/or more accurate. In MO calculations, positions of the nuclei of the atoms are assumed, and the wave equations take account only of... 

A molecular mechanics calculation gives the total potential energy of each conformation. If the mole fractions of all the conformations are known, or can be calculated, the enthalpy of formation of the compound can be obtained. 

Many workers have offered the opinion that the isokinetic relationship is confined to reactions in condensed phase (6, 122) or, more specially, may be attributed to solvation effects (13, 21, 37, 43, 56, 112, 116, 124, 126-130) which affect both enthalpy and entropy in the same direction. The most developed theories are based on a model of the half-specific quasi-crystalline solvation (129, 130), or of the nonideal conformal solutions (126). Other explanations have been given in terms of vibrational frequencies involving solute and solvent (13, 124), temperature dependence of solvent fluidity in the quasi-crystalline model (40), or changes of enthalpy and entropy to produce a hole in the solvent (87). 

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