Electrostatic potential maps bonding

The representation of molecules by molecular surface properties was introduced in Section 2.10. Different properties such as the electrostatic potential, hydrogen bonding potential, or hydrophobicity potential can be mapped to this surface and seiwe for shape analysis [44] or the calculation of surface autocorrelation vectors (refer to Section 8.4.2). 

FIGURE 1 6 Molecular models of methane (CH4) (a) Framework (tube) models show the bonds connecting the atoms but not the atoms themselves (b) Ball and stick (ball and spoke) models show the atoms as balls and the bonds as rods (c) Space filling models portray overall molecular size the radius of each sphere approximates the van der Waals radius of the atom (d) An electrostatic potential map of methane... 

The greater positive character hence the increased acidity of the O—H proton of 2 2 2 tnfluoroethanol can be seen m the electrostatic potential maps displayed m Figure 1 8 Structural effects such as this that are transmitted through bonds are called indue tive effects A substituent induces a polarization m the bonds between it and some remote site A similar inductive effect is evident when comparing acetic acid and its trifluoro derivative Trifluoroacetic acid is more than 4 units stronger than acetic acid... 

The structure of ethylene and the orbital hybridization model for its double bond were presented m Section 2 20 and are briefly reviewed m Figure 5 1 Ethylene is planar each carbon is sp hybridized and the double bond is considered to have a a component and a TT component The ct component arises from overlap of sp hybrid orbitals along a line connecting the two carbons the tt component via a side by side overlap of two p orbitals Regions of high electron density attributed to the tt electrons appear above and below the plane of the molecule and are clearly evident m the electrostatic potential map Most of the reactions of ethylene and other alkenes involve these electrons... 

FIGURE 5 1 (a) The planar framework of u bonds in ethylene showing bond distances and angles (b) and (c) The p orbitals of two sp hybridized carbons overlap to produce a tt bond (d) The electrostatic potential map shows a region of high negative potential due to the tt elec trons above and below the plane of the atoms... 

Examine the electrostatic potential map of H3B THE (borane-tetrahydrofuran complex) on Learning By Modeling How does the electrostatic potential of the hydrogens bonded to boron dif fer from the potential of the hydrogens of the tetrahydrofuran ring" ... 

An sp hybridization model for the carbon-carbon triple bond was developed in Section 2 21 and is reviewed for acetylene in Figure 9 2 Figure 9 3 compares the electrostatic potential maps of ethylene and acetylene and shows how the second tr bond m acetylene causes a band of high electron density to encircle the molecule... 

FIGURE 113 (a) The framework of bonds shown in the tube model of benzene are cr bonds (b) Each carbon is sp hybridized and has a 2p orbital perpendicular to the cr framework Overlap of the 2p orbitals generates a tt system encompass mg the entire ring (c) Electrostatic potential map of benzene The red area in the center corresponds to the region above and below the plane of the ring where the tt electrons are concentrated... 

Section 14 14 Transition metal complexes that contain one or more organic ligands offer a rich variety of structural types and reactivity Organic ligands can be bonded to a metal by a ct bond or through its it system Metallocenes are transition metal complexes m which one or more of the ligands is a cyclopentadienyl ring Ferrocene was the first metallocene synthesized Its electrostatic potential map opens this chapter... 

Find the model of dimethyl sulfoxide [(CH3)2S=0] on Learning By Modeling and exam me Its electrostatic potential map To which atom (S or O) would you expect a proton to bond d... 

An orbital hybridization description of bonding m methylamme is shown m Figure 22 2 Nitrogen and carbon are both sp hybridized and are joined by a ct bond The unshared electron pair on nitrogen occupies an sp hybridized orbital This lone parr IS involved m reactions m which amines act as bases or nucleophiles The graphic that opened this chapter is an electrostatic potential map that clearly shows the concentration of electron density at nitrogen m methylamme... 

FIGURE 2.4 Valence bond picture of bonding in H2 as illustrated by electrostatic potential maps. The Is orbitals of two hydrogen atoms overlap to give an orbital that contains both electrons of an H2 molecule. 

FIGURE 6.4 Electrostatic potential maps of HCI and ethylene. When the two react, the interaction is between the electron-rich site (red) of ethylene and electron-poor region (blue) of HCI. The electron-rich region of ethylene is associated with the TT electrons of the double bond, and H is the electron-poor atom of HCI. 

FIGURE 9.3 Electrostatic potential maps of ethylene and acetylene. The region of highest negative charge (red) is associated with the TT bonds and lies between the two carbons in both. This electron-rich region is above and below the plane of the molecule in ethylene. Because acetylene has two TT bonds, a band of high electron density encircles the molecule. 

The S—H bond is less polai than the O—H bond, as is cleaiTy seen in the electrostatic potential maps of Figure 15.7. The decreased polarity of the S—H bond, especially the decreased positive character of the proton, causes hydrogen bonding to be absent in thiols. Thus, methanethiol (CH3SH) is a gas at room temperature (bp 6°C), whereas methanol (CH3OH) is a liquid (bp 65°C). 

Electron densities, bond densities, and spin densities, as well as particular molecular orbitals may be displayed as graphical surfaces. In addition, the value of the electrostatic potential or the absolute value of a particular molecular orbital may be mapped onto an electron density surface. These maps provide information about the environment around the accessible surface of a molecule. Electrostatic potential maps show overall charge distribution, while orbital maps reveal likely sites for electrophilic and/or nucleophilic attack. Surface displays may be combined with any type of model display. 

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