Electronic-peptide

In both ECD and ETD, the initial conditions appropriate to the experiments do not correspond to the ground electronic state of the electron/peptide (ECD) or anion/ peptide (ETD) system. In both cases, there are a myriad of lower-energy electronic states, and this fact presents major challenges to the theoretical study of these processes. In Figure 2, we show qualitative plots of energies as functions of the distance R between a H3C anion donor and a polypeptide having total charge Z. 

Nature s Approach Solid-Phase Synthesis of TT-Conjugated Molecules Electronic Peptides Summary and Outlook.7-37... 

Mass spectral fragmentation patterns of alkyl and phenyl hydantoins have been investigated by means of labeling techniques (28—30), and similar studies have also been carried out for thiohydantoins (31,32). In all cases, breakdown of the hydantoin ring occurs by a-ftssion at C-4 with concomitant loss of carbon monoxide and an isocyanate molecule. In the case of aryl derivatives, the ease of formation of Ar—NCO is related to the electronic properties of the aryl ring substituents (33). Mass spectrometry has been used for identification of the phenylthiohydantoin derivatives formed from amino acids during peptide sequence determination by the Edman method (34). 

Resonance Raman Spectroscopy. If the excitation wavelength is chosen to correspond to an absorption maximum of the species being studied, a 10 —10 enhancement of the Raman scatter of the chromophore is observed. This effect is called resonance enhancement or resonance Raman (RR) spectroscopy. There are several mechanisms to explain this phenomenon, the most common of which is Franck-Condon enhancement. In this case, a band intensity is enhanced if some component of the vibrational motion is along one of the directions in which the molecule expands in the electronic excited state. The intensity is roughly proportional to the distortion of the molecule along this axis. RR spectroscopy has been an important biochemical tool, and it may have industrial uses in some areas of pigment chemistry. Two biological appHcations include the deterrnination of helix transitions of deoxyribonucleic acid (DNA) (18), and the elucidation of several peptide stmctures (19). A review of topics in this area has been pubHshed (20). 

Figure 18.12 The electron-density map is interpreted by fitting into it pieces of a polypeptide chain with known stereochemistry such as peptide groups and phenyl rings. The electron density (blue) is displayed on a graphics screen in combination with a part of the polypeptide chain (red) in an arbitrary orientation (a). The units of the polypeptide chain can then be rotated and translated relative to the electron density until a good fit is obtained (b). Notice that individual atoms are not resolved in such electron densities, there are instead lumps of density corresponding to groups of atoms. [Adapted from A. Jones Methods Enzym. (eds. H.W. Wyckoff, C.H. Hirs, and S.N. Timasheff) 115B 162, New York Academic Press, 1985.]...

Complex II is perhaps better known by its other name—succinate dehydrogenase, the only TCA cycle enzyme that is an integral membrane protein in the inner mitochondrial membrane. This enzyme has a mass of approximately 100 to 140 kD and is composed of four subunits two Fe-S proteins of masses 70 kD and 27 kD, and two other peptides of masses 15 kD and 13 kD. Also known as flavoprotein 2 (FP2), it contains an FAD covalently bound to a histidine residue (see Figure 20.15), and three Fe-S centers a 4Fe-4S cluster, a 3Fe-4S cluster, and a 2Fe-2S cluster. When succinate is converted to fumarate in the TCA cycle, concomitant reduction of bound FAD to FADHg occurs in succinate dehydrogenase. This FADHg transfers its electrons immediately to Fe-S centers, which pass them on to UQ. Electron flow from succinate to UQ,... 

It should be emphasized here that the four major complexes of the electron transport chain operate quite independently in the inner mitochondrial membrane. Each is a multiprotein aggregate maintained by numerous strong associations between peptides of the complex, but there is no evidence that the complexes associate with one another in the membrane. Measurements of the lateral diffusion rates of the four complexes, of coenzyme Q, and of cytochrome c in the inner mitochondrial membrane show that the rates differ considerably, indicating that these complexes do not move together in the membrane. Kinetic studies with reconstituted systems show that electron transport does not operate by means of connected sets of the four complexes. 

The amide bond that links different amino acids together in peptides is no different from any other amide bond (Section 24.3). Amide nitrogens are non-basic because their unshared electron pair is delocalized by interaction with the carbonyl group. This overlap of the nitrogen p orbital with the p orbitals of the carbonyl group imparts a certain amount of double-bond character to the... 

Long range electron transfer in peptides and proteins. S. S. Isied, Prog. Inorg. Chem., 1984, 32, 443 (187). 

Complex III 280 kDa 11 28 type hemes (b and bg) bound to same mitochondrially coded peptide 1 C heme (cytochrome c,) 1 Fe-S center Rieske factor Spans membrane, cytochrome b, and b in membrane, cytochrome c, and Fe-S center on outer face 0.25-0.53 Pumps protons out of matrix during electron transport/2e"... 

All the complexes consist of several subunits (Table 2) complex I has a flavin mononucleotide (FMN) prosthetic group and complex II a flavin adenine dinucleotide (FAD) prosthetic group. Complexes I, II, and III contain iron-sulphur (FeS) centers. These centers contain either two, three, or four Fe atoms linked to the sulphydryl groups of peptide cysteine residues and they also contain acid-labile sulphur atoms. Each center can accept or donate reversibly a single electron. 

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