And electron density

If we consider the scattering from a general two-phase system (figure B 1.9.10) distinguished by indices 1 and 2) containing constant electron density in each phase, we can define an average electron density and a mean square density fluctuation as ... 

Figure B3.2.10. Contour plot of the electron density obtained by an orbital-free Hohenberg-Kolnr teclmique [98], The figure shows a vacancy in bulk aluminium in a 256-site cell containing 255 A1 atoms and one empty site, the vacancy. Dark areas represent low electron density and light areas represent high electron density. A Kolm-Sham calculation for a cell of this size would be prohibitively expensive. Calculations on smaller cell sizes using both techniques yielded densities that were practically identical.

I lie electronic contribution arises from a continuous function of electron density and must be calculated using the appropriate operator ... 

By introducing this expression for the electron density and applying the appropriate variational condition the following one-electron Kohn-Sham equations result ... 

Local spin density functional theory (LSDFT) is an extension of regular DFT in the same way that restricted and unrestricted Hartree-Fock extensions were developed to deal with systems containing unpaired electrons. In this theory both the electron density and the spin density are fundamental quantities with the net spin density being the difference between the density of up-spin and down-spin electrons ... 

P(r,i) is the pairwise potential, which, depending upon the model, can be considered tc include electrostatic and repulsive contributions. The second term is a function of th< electron density, and varies with the square root, in keeping with the second-momen approximation. The electron density for an afom includes contributions from the neigh bouring atoms as follows ... 

Traditionally, least-squares methods have been used to refine protein crystal structures. In this method, a set of simultaneous equations is set up whose solutions correspond to a minimum of the R factor with respect to each of the atomic coordinates. Least-squares refinement requires an N x N matrix to be inverted, where N is the number of parameters. It is usually necessary to examine an evolving model visually every few cycles of the refinement to check that the structure looks reasonable. During visual examination it may be necessary to alter a model to give a better fit to the electron density and prevent the refinement falling into an incorrect local minimum. X-ray refinement is time consuming, requires substantial human involvement and is a skill which usually takes several years to acquire. 

The simplest molecular orbital method to use, and the one involving the most drastic approximations and assumptions, is the Huckel method. One str ength of the Huckel method is that it provides a semiquantitative theoretical treatment of ground-state energies, bond orders, electron densities, and free valences that appeals to the pictorial sense of molecular structure and reactive affinity that most chemists use in their everyday work. Although one rarely sees Huckel calculations in the resear ch literature anymore, they introduce the reader to many of the concepts and much of the nomenclature used in more rigorous molecular orbital calculations. 

A more complex set of functionals utilizes the electron density and its gradient. These are called gradient-corrected methods. There are also hybrid methods that combine functionals from other methods with pieces of a Hartree-Fock calculation, usually the exchange integrals. 

Molecular volumes are usually computed by a nonquantum mechanical method, which integrates the area inside a van der Waals or Connolly surface of some sort. Alternatively, molecular volume can be determined by choosing an isosurface of the electron density and determining the volume inside of that surface. Thus, one could find the isosurface that contains a certain percentage of the electron density. These properties are important due to their relationship to certain applications, such as determining whether a molecule will fit in the active site of an enzyme, predicting liquid densities, and determining the cavity size for solvation calculations. 

The condensation of aldehydes or ketones with secondary amines leads to "encunines via N-hemiacetals and immonium hydroxides, when the water is removed. In these conjugated systems electron density and nudeophilicity are largely transferred from the nitrogen to the a-carbon atom, and thus enamines are useful electroneutral d -reagents (G.A. Cook, 1969 S.F. Dyke, 1973). A bulky heterocyclic substituent supports regio- and stereoselective reactions. 

The correlation is difficult in the case of thiazole and substituted thiazoles because of different effects field effect and anisotropy of hetero-atoms (110), which are very difficult to describe and calculate. When the importance of these two effeas is determined it is then possible to have a good correlation between tt electron densities and corrected chemical... 

TABLE II1-4. correlation BETWEEN ir ELECTRON DENSITIES AND CORRECTED CHEMICAL SHIFTS (108,110)... 

For a quantum mechanical calculation, the single point calculation leads to a wave function for the molecular system and considerably more information than just the energy and gradient are available. In principle, any expectation value might be computed. You can get plots of the individual orbitals, the total (or spin) electron density and the electrostatic field around the molecule. You can see the orbital energies in the status line when you plot an orbital. Finally, the log file contains additional information including the dipole moment of the molecule. The level of detail may be controlled by the PrintLevel entry in the chem.ini file. 

Plasma Types. Eigure 1 (7—9) indicates the various types of plasmas according to their electron density and electron temperature. The colder or low electron energy regions contain cold plasmas such as interstellar and interplanetary space the earth s ionosphere, of which the aurora boreaUs would be a visible type alkaU-vapor plasmas some flames and condensed-state plasmas, including semiconductors (qv). 

Figure 2 LCAO MO calculations of tt-electron densities and bond orders...

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