Effects of ligands

Other important effects of ligand and pH changes on redox potentials will be given under the appropriate element. 

Helms and McCammon 1997] Helms, V., McCammon, J.A. Kinase Conformations A computational study of the effect of ligand binding. Prot. Sci. 6 (1997) 2336-2343... 

Lewis-acid catalysed decarboxylatiom. Later studies have focnsed on the effects of ligands on the efficiency of the catalysed reaction" This topic will be discussed extensively in Chapter 3. 

When exclusively considering Lewis-add catalysis, the literature on ligand effects can be divided into studies describing quantitatively the effect of ligands on rates and equilibria of the individual steps in the catalytic cycle on one hand, and studies focused on the enantioselectivity of the reaction on the other. Interestingly, in the majority of the former investigations, aqueous media are employed. 

In Chapter 2 the Diels-Alder reaction between substituted 3-phenyl-l-(2-pyridyl)-2-propene-l-ones (3.8a-g) and cyclopentadiene (3.9) was described. It was demonstrated that Lewis-acid catalysis of this reaction can lead to impressive accelerations, particularly in aqueous media. In this chapter the effects of ligands attached to the catalyst are described. Ligand effects on the kinetics of the Diels-Alder reaction can be separated into influences on the equilibrium constant for binding of the dienoplule to the catalyst (K ) as well as influences on the rate constant for reaction of the complex with cyclopentadiene (kc-ad (Scheme 3.5). Also the influence of ligands on the endo-exo selectivity are examined. Finally, and perhaps most interestingly, studies aimed at enantioselective catalysis are presented, resulting in the first example of enantioselective Lewis-acid catalysis of an organic transformation in water. 

The effect of ligands on the endo-exo selectivity of Lewis-acid catalysed Diels-Alder reactions has received little attention. Interestingly, Yamamoto et al." reported an aluminium catalyst that produces mainly exo Diels-Alder adduct. The endo-approach of the diene, which is normally preferred, is blocked by a bulky group in the ligand. 

In contrast, investigation of the effect of ligands on the endo-exo selectivity of the Diels-Alder reaction of 3.8c with 3.9 demonstrated that this selectivity is not significantly influenced by the presence of ligands. The effects of ethylenediamine, 2,2 -bipyridine, 1,10-phenanthroline, glycine, L-tryptophan and L-abrine have been studied. The endo-exo ratio observed for the copper(II)-catalysed reaction in the presence of these ligands never deviated more than 2% from the endo-exo ratio of 93-7 obtained for catalysis by copper aquo ion. 

Table 7.5 Catalytic and deactivating effects of ligands on metal-catalysed autoxidation of petroleum. (After Pedersen )...

The effect of ligand and metal hardness on the formation of hydrido- and organo-metallic complexes by the -interaction. R. J. Cross, Inorg. Chim. Acta, Rev., 1969, 3,75-79 (52). 

Closely related mixed amido/imido/guanidinato tantalum complexes of the type Ta(NR R )[(R R2N)C(NR )2]( = NR ) (R R = Me, Et R = Cy, Pr R = Pr", BuO were synthesized by the insertion of carbodiimides into to tantalum-amide bonds in imidotantalum triamide precursors, and the effects of ligand substitution on thermal properties were studied by TGA/DTA measurements. In addition, selected compounds were pyrolyzed at 600 °C and the decomposition products were studied by GC-MS and NMR spectroscopy. ... 

Leciejewicz J, Alcock NW, Kemp TJ (1995) Carboxylato Complexes of The Uranyl Ion Effects of Ligand Size and Coordinat. Geometry Upon Molecular and Crystal Structure. 82 43-84... 

Erickson JA, Jalaie M, Robertson DH, Lewis RA, Vieth M. Lessons in molecn-lar recognition the effects of ligand and protein flexibility on molecular docking accuracy. J Med Chem 2004 47 45-55. 

Fig. 6 Effect of ligand dosage on the Raman spectra of TS-1. Dehydrated TS-1 (full line), after interaction with water, from the liquid phase (dotted line) a k = 1064 nm, b = 325 nm, c k = 244 nm. d Dehydrated TS-1 (full line), after interaction with ammonia, from the gas phase (dotted line) k = 1064 nm. Adapted from [48] with permission. Copyright (2003) by The Owner Societies 2003...

Identification of proteins that bind to Z-DNA added one further step to the establishment of the presence of Z-DNA in vivo and its possible biological role. Herbert and Rich [22] demonstrated an in vitro assay system where one type of double-stranded RNA adenosine deaminase, called DRAD-binding Z-DNA. There are evidences that topoisomerase II from Drosophila, hiunan and calf thymus recognizes a number of DNA shapes, including Z-DNA [34,35]. Bloomfield and coworkers [36] have found that the condensation of plasmids is enhanced by Z-DNA conformation in d(CG)n repeats. The information related to B-Z transition [31], the effect of ligands on it [28,29] and X-ray crystal structure data [37,38] appear to suggest that the possible biological role of this polymorphic form of DNA will be soon established. 

The role of the ligands is both to stabilize the Pd(0) state and to tune the reactivity of the palladium. The outline mechanism above does not specify many detailed aspects of the reaction that are important to understanding the effect of ligands, added salts, and solvents. Moreover, it does not address the stereochemistry, either in terms of the Pd center (tetracoordinate pentacoordinate , cisl, transl) or of the reacting carbon groups (inversion , retention ). Some of these issues are addressed by a more detailed mechanism.190... 

Figure 2. Effect of ligand molecular weight on the sustained release rate from Adjuvax.

Silver(I) isocyanide complexes have been known for a long time and they were usually prepared by alkylation of silver cyanide.226 More recent reports include the study of steric effects of ligands... 

There is a large amount of data available concerning the thermodynamic effects of ligands on other coordination sites (i. e., the thermodynamic cis- and iraws-effects). However, very little is known about the effects of ligands on the kinetic lability of other coordination sites. In fact, very little work has been carried out, directly with Bi2-derivatives, or with models of B12, on the kinetics of ligand substitution at the cobalt center. Of particular biochemical interest would be studies on the rate of displacement of coordinated benzimidazole by various ligands. Such work has not been reported at present. If the benzimidazole is replaced during enzymatic catalysis so that the lower axial position is occupied by some other Lewis base, one would expect this displacement, and the reverse step, to be very facile. This appears to be qualitatively true in that when water displaces benzimidazole as the benzimidazole is pro-... 

Figure 2.7 Effect of various factors on nanoparticle dispersion (as determined by tracking the absorbance oTIspr) as a function of applied C02 pressure, (a) effect of temperature on DDT-stabilized gold nanoparticles dispersed in hexane (b) effect of solvent on DDT-stabilized gold nanoparticles at room temperature (c) effect of ligand on gold...

Recently, very effective asymmetric conjugate addition of 1,3-dicarbonyl compounds to nitroalkenes has been reported, as shown in Scheme 4.10. The reaction of ethyl acetoacetate with nitrostyrene is carried out in the presence of 5 mol% of the preformed complex of magnesium triflate and chiral bis(oxazoline) ligands and a small amount ofW-methylmorpholine (NMM) to give the adduct with selectivity of 91%. The selectivity depends on ligands. The effect of ligands is presented in Scheme 4.10.63... 

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