Eukaryotic Promoter Database

Perier, R. C., Junier, T., Bonnard, C. Bucher, P. (1999). The Eukaryotic Promoter Database (EPD) recent developments. Nucleic Acids Res 27,307-9. [Pg.14]

Several of the general promoter prediction programs followed the basic design of Prestridge who used the Eukaryotic Promoter Database (EPD) by Bucher [51] to train his software for promoter recognition. His program PromoterScan was the first published method to tackle this problem [52]. [Pg.147]

The first and most well-known promoter database, the Eukaryotic Promoter Database (EPD) (I) consists of promoter sequences extracted from the up- and downstream regions of either experimentally or in. vt/firt-determined transcription... [Pg.319]

Codon usage from GenBank (CUTG) Eukaryotic promoter database (EPD) Functional molecular immunology ... [Pg.514]

Gene sequence database. More than 20 other databases including SWISS-PROT, ACeDB, FlyBase, Eukaryotic Promoter Database, Restriction Enzyme Database, Transcription Factor Database, and CarbBank/CCSD. Databases and software development tools for sequence data available for anonymous ftp ncbi.nlm.nih.gov (130.14.25.1). [Pg.326]

Eukaryotic polymerase II promoter server Exlnt database ExPASy, tools FlyBase GDB GenBank,... [Pg.349]

All known transcription faaors are proteins except for a unique transcription factor (TFIIIR), for RNA Pol III in Bombyx mori, which is an isoleucine tRNA (33). This section provides an overview of the structural and functional characteristics of eukaryotic class II transcription factors which act on RNA Pol II and class II promoters. [Note For more extensive information on transcription factors and their properties, readers should consult the Transcription Factors Database (TFD) compiled by the National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland.]... [Pg.507]

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