Conformation conformational isomers

Because of the cylindrical symmetry of cr bonds (Section 3.8), orbital overlap in the C-C single bond of ethane is exactly the same regardless of the geometric relationships among other atoms attached to the carbons (Figure 4.1). The different arrangements of atoms that result from rotation about a single bond are called conformations, and a specific conformation is called a conformer (conformational isomer). Unlike constitutional isomers, which have different connection. of atoms, different conformers have... 

The different arrangements of atoms caused by rotation about a single bond are called conformations. A conformer (or conformational isomer) is a compound with a particular conformation. Conformational isomers can be represented by Sawhorse representations or Newman projections. 

Conformational analysis The study of the configuration of atoms and the relative molecular energies that result from rotation about any of the single bonds in a molecule. The possible individual arrangements of atoms in space are called conformers, conformational isomers, or rotamers. The methods of choice for the characterization of the conformation of molecules in the three aggregation states viz. solid (crystalline), dissolved, and gaseous (isolated state) are X-ray diffraction, NMR, and computational methods, respectively. 

Isomers Compounds that have the same molecular formula but which have different constitutions (constitutional isomers), configurations (enantiomers, diastereomers), or conformations (conformational isomers), and therefore have different chemical and/or physical properties. 

Conformational Isomers. A molecule in a conformation into which its atoms return spontaneously after small displacements is termed a conformer. Different arrangements of atoms that can be converted into one another by rotation about single bonds are called conformational isomers (see Fig. 1.1). A pair of conformational isomers can be but do not have to be mirror images of each other. When they are not mirror images, they are called diastereomers. 

When two different substituents are attached to each carbon atom of the double bond, cis-trans isomers can exist. In the case of c T-2-butene (Fig. 1.11a), both methyl groups are on the same side of the double bond. The other isomer has the methyl groups on opposite sides and is designated as rran5--2-butene (Fig. l.llb). Their physical properties are quite different. Geometric isomerism can also exist in ring systems examples were cited in the previous discussion on conformational isomers. 

The results are critically dependent on the level of theory. However, a stepwise mechanism with closed shell structures along the reaction path was found to be lower in energy than a concerted reaction. An all-cw conformer of 172 is reported to be a transition state rather than an intermediate. Similarities of the conformational isomers of the intermediate 2-butenedithial 172 with the dinitrosoethylenes discussed in Section IV,c are evident. 3,6-Diamino-substituted dithiins are predicted to be more stable in the open-chain bisthioamide structure [95JST51]. The... 

The different arrangements of atoms that result from bond rotation are called conformations, and molecules that have different arrangements are called conformational isomers, or conformers. Unlike constitutional isomers, however, different conformers can t usually be isolated because they interconvert too rapidly. 

Conformational isomers are represented in two ways, as shown in Figure 3.6. A sawhorse representation views the carbon-carbon bond from an oblique angle and indicates spatial orientation by showing all C-Tl bonds. A Newman projection views the carbon-carbon bond directly end-on and represents the two carbon atoms by a circle. Bonds attached to the front carbon are represented by lines to the center of the circle, and bonds attached to the rear carbon are represented by lines to the edge of the circle. 

The molecular formulas of PMs (Table 9.5) obtained by high-resolution mass spectrometry in collaboration with Prof. Y. Kishi, Harvard University, indicate that PMs are formed by the condensation of three molecules of PS and two molecules of methylamine, with the removal of four water molecules. No study has been made on their conformational isomers. 

Li" " and Na+ (preferentially Na" ), but not K", Mg or Ca. Molecules such as these, whose cavities can be occupied only by spherical entities, have been called spherands. Other types are calixarenes (e.g., 22). There is significant hydrogen bonding involving the phenolic OH units in [4]calixarenes, but this diminishes as the size of the cavity increases in larger ring calixarenes. There are also calix[4]-arenes, which have been shown to have conformational isomers (see p. 167) in... 

If two different three-dimensional arrangements in space of the atoms in a molecule are interconvertible merely by free rotation about bonds, they are called conformationsIf they are not interconvertible, they are called configurations Configurations represent isomers that can be separated, as previously discussed in this chapter. Conformations represent conformers, which are rapidly interconvertible and are thus nonseparable. The terms conformational isomer and rotamer are sometimes used instead of conformer . A number of methods have been used to determine conformations. These include X-ray and electron diffraction, IR, Raman, UV, NMR, and microwave spectra, photoelectron spectroscopy, supersonic molecular jet spectroscopy, and optical rotatory dispersion (ORD) and CD measurements. Some of these methods are useful only for solids. It must be kept in mind that the conformation of a molecule in the solid state is not necessarily the same as in solution. Conformations can be calculated by a method called molecular mechanics (p. 178). 

Table 4 Geometrical parameters of two bond lengths data from ref [17]) conformational isomers of gaseous trisulfane (r ...

Fig. 2 Three conformational isomers of the tetrasulfane molecule H2S4 differing by the signs of the torsional angles at the three SS bonds (after [47])...

A peptoid pentamer of five poro-substituted (S)-N-(l-phenylethyl)glycine monomers, which exhibits the characteristic a-helix-like CD spectrum described above, was further analyzed by 2D-NMR [42]. Although this pentamer has a dynamic structure and adopts a family of conformations in methanol solution, 50-60% of the population exists as a right-handed helical conformer, containing all cis-amide bonds (in agreement with modeling studies [3]), with about three residues per turn and a pitch of 6 A. Minor families of conformational isomers arise from cis/trans-amide bond isomerization. Since many peptoid sequences with chiral aromatic side chains share similar CD characteristics with this helical pentamer, the type of CD spectrum described above can be considered to be indicative of the formation of this class of peptoid helix in general. 

Figure 2.25. Energy landscape (BP/DNP) for the Cu ZSM-5 + 2NO- Cu—0 ZSM-5 + N20 reaction, showing all associated spin and conformation isomers calculated for the M5 site. The values are given in kcal x mol-1. The letters S, D and T indicate the singlet, doublet, and triplet states, respectively (after [75]).

Chirality transfer in catalytic asymmetric hydrogenation can be achieved not only by using powerful chiral ligands such as BINAP or DuPhos but also by the formation of a dynamic conformational isomer. The availability of many enantiomerically pure diols allows the production of electron-deficient, bi-dentate phosphate in the form of 27. The backbone O-R -O can define the chirality of the 0-R2-0 in complex 28, hence realizing the chirality transfer.44... 

---