Compartmentalization mitochondria

Pathways are compartmentalized within the cell. Glycolysis, glycogenesis, glycogenolysis, the pentose phosphate pathway, and fipogenesis occur in the cytosol. The mitochondrion contains the enzymes of the citric acid cycle, P-oxidation of fatty acids, and of oxidative phosphorylation. The endoplasmic reticulum also contains the enzymes for many other processes, including protein synthesis, glycerofipid formation, and dmg metabolism. 

The compartmentalization of energy generation provides a mechanism for the increased efficiency of high energy bond transfer to form the ultimate cellular fuel ATP, and has been the driving force behind the evolution of the mitochondrion. This viewpoint is supported by studies of the mitochondrial proteome, which have demonstrated that proteins of eubacterial origin predominantly... 

Compartmentalization of Citric Acid Cycle Components Isocitrate dehydrogenase is found only in the mitochondrion, but malate dehydrogenase is found in both the cytosol and mitochondrion. What is the role of cytosolic malate dehydrogenase ... 

Compartmentation in /3 Oxidation Free palmitate is activated to its coenzyme A derivative (palmitoyl-CoA) in the cytosol before it can be oxidized in the mitochondrion. If palmitate and [14C]coenzyme A are added to a liver homogenate, palmitoyl-CoA isolated from the cytosolic fraction is radioactive, but that isolated from the mitochondrial fraction is not. Explain. 

Figure 16.28. Compartmental Cooperation. Oxaloacetate utilized in the cytosol for gluconeogenesis is formed in the mitochondrial matrix by carboxylation of pyruvate. Oxaloacetate leaves the mitochondrion by a specific transport system (not shovm) in the form of malate, -which is reoxidized to oxaloacetate in the cytosol.

The complex tetrapyrrole ring structure of heme is built up in a stepwise fashion from the very simple precursors sue-cinyl-CoA and glycine (Figure 32-2). The pathway is present in all nucleated cells. From measurements of total bilirubin production, it has been estimated that daily synthesis of heme in humans is 5 to 8mmol/kg body weight. Of this, 70% to 80% occurs in the bone marrow and is used for hemoglobin synthesis. Approximately 15% is synthesized in the liver and is used to produce cytochrome P-450, mitochondrial cytochromes, and other hemoproteins. The pathway is compartmentalized, with some steps occurring in the mitochondrion and others in the cytoplasm. Little is known about the transport of intermediates across the mitochondrial membrane, and no transport defect has yet been reported in the porphyrias. 

FIG. 3.1 Main types of subcellular organization of carbohydrate catabolism in eukaryotes. (A) No compartmentation (Giardia sp., Entamoeba sp.) (B) cytosolic/hydrogenosomal compartmentation (Trichomonas vaginalis, other trichomonads) (C) cytosolic/mitochondrial compartmentation (most eukaryotic cells). 1, hydrogenosome 2, mitochondrion. 

In the cell, compartmentation of enzymes into multienzyme complexes or organelles provides a means of regulation, either because the compartment provides unique conditions or because it limits or channels access of the enzymes to substrates. Enzymes or pathways with a common function are often assembled into organelles. For example, enzymes of the TCA cycle are all located within the mitochondrion. The enzymes catalyze sequential reactions, and the product of one reaction is the substrate for the next reaction. The concentration of the pathway intermediates remains much higher within the mitochondrion than in the surrounding cellular cytoplasm. 

Folate metabolism is not limited to the cytoplasmic compartment. Most of the folate in tissues is found in the mitochondrion and cytosol (Horne et al. 1997). Individual folate-dependent pathways are compartmentalized within organelles. The cytoplasmic and mitochondrial compartments each possess a parallel array of enzymes catalysing the interconversion of folate coenzymes that carry one-carbon units. The mitochondrial folate metabolism favours incorporation of one-carbon groups from serine and release of formate, while the cytoplasmic metabolism favours incorporation of one-carbon units from formate with purine and thymidine synthesis and homocysteine remethylation. 

The compartmentation of 5-AL-synthetase inside the mitochondrion and 5-AL-dehydrase outside suggests still another mechanism of control of porphyrin biosynthesis, namely a permeability control for 6-AL at the membrane as indicated in figure 31. This figure is also a summary of the known steps of porphyrin biosynthesis, of their tentatively assigned locations in the cell, and of possible sites of enzymic change in the porphyria diseases. 

Of all the intracellular organelles, the mitochondrion has been the most extensively studied with respect to the compartmentation of compounds within its boimdaries. In part, this results from the ease of separation of mitochondria from mammalian tissues (most notably the liver), as well as from the key role mitochondria play in a number of metabolic processes. The mitochondrial membrane is capable of transporting metabolites on specific transporters and of segregating metabolites from the cytosol. It is important to note that some metabolites apparently move across the mitochondrial membrane in an unspecific or non-carrier-linked manner. For example, ketone bodies, water, CO2, and oxygen appear to freely diffuse into and out of mitochondria. In the following sections we will discuss specific aspects of the transport mechanisms, followed by a more general discussion of their role in regulating major metabolic pathways. We will start with the most important result of intracellular compartmentation—oxidative phosphorylation—as viewed by the chemiosmotic theory. 

Unlike glycolysis, which occurs strictly in the cell cytosol, gluconeogen-esis involves a complex interaction between the mitochondrion and the cytosol. This interaction is necessitated by the irreversibility of the pyruvate kinase reaction, by the relative impermeability of the inner mitochondrial membrane to oxaloacetate, and by the specific mitochondrial location of pyruvate carboxylase. Compartmentation within the cell has led to the distribution of a number of enzymes (aspartate and alanine aminotransferases, and NAD -malate dehydrogenase) in both the mitochondria and the cytosol. In the classical situation represented by the rat, mouse, or hamster hepatocyte, the indirect "translocation" of oxaloacetate—the product of the pyruvate carboxylase reaction—into the cytosol is effected by the concerted action of these enzymes. Within the mitochondria oxaloacetate is converted either to malate or aspartate, or both. Following the exit of these metabolites from the mitochondria, oxaloacetate is regenerated by essentially similar reactions in the cytosol and is subsequently decarboxylated to P-enolpyruvate by P-enol-pyruvate carboxykinase. Thus the presence of a membrane barrier to oxaloacetate leads to the functioning of the malate-aspartate shuttle as an important element in gluconeogenesis. 

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