Circular dichroism type

As in tic, another method to vaUdate a chiral separation is to collect the individual peaks and subject them to some type of optical spectroscopy, such as, circular dichroism or optical rotary dispersion. Enantiomers have mirror image spectra (eg, the negative maxima for one enantiomer corresponds to the positive maxima for the other enantiomer). One problem with this approach is that the analytes are diluted in the mobile phase. Thus, the sample must be injected several times. The individual peaks must be collected and subsequently concentrated to obtain adequate concentrations for spectral analysis. 

Incorporation of chiral units into polymers generates optically active polymers.27 Two types of optically active polymers could be obtained according to where the chiral units reside optically active polymers with chirality derived from chiral side chains and optically active polymers with chirality derived from tire chiral main chain. The circular dichroism (CD) measurement of 32, an optically active polymer with chiral side chains, showed that the chiral substituents have induced main-chain chirality. The induced main-chain chirality disappeared at higher temperature and appeared upon cooling. This type of chiral conjugated polymer is potentially useful in reversing optical recording28 ... 

Optical activity in metal complexes may also arise either if one of the ligands bound to the metal in the first co-ordination sphere is itself optically active or if the complex as a whole lacks a centre of inversion and a plane of symmetry. Thus all octahedral cts-complexes of the tris-or bis-chelate type have two isomeric forms related by a mirror plane, the d- and /-forms. These species have circular dichroism spectra of identical intensities but opposite in sign. The bands in the circular dichroism spectrum are, of course, modified if ligand exchange occurs but they are also exceedingly sensitive to the environment beyond the first co-ordination sphere. This effect has been used to obtain association constants for ion-pair formation. There also exists the possibility that, if such compounds display anti-tumour activity, only one of the mirror isomers will be effective. 

To obtain statistically significant comparisons of ordered and disordered sequences, much larger datasets were needed. To this end, disordered regions of proteins or wholly disordered proteins were identified by literature searches to find examples with structural characterizations that employed one or more of the following methods (1) X-ray crystallography, where absence of coordinates indicates a region of disorder (2) nuclear magnetic resonance (NMR), where several different features of the NMR spectra have been used to identify disorder and (3) circular dichroism (CD) spectroscopy, where whole-protein disorder is identified by a random coil-type CD spectrum. 

Determination of protein secondary structure has long been a major application of optical spectroscopic studies of biopolymers (Fasman, 1996 Havel, 1996 Mantsch and Chapman, 1996). These efforts have primarily sought to determine the average fractional amount of overall secondary structure, typically represented as helix and sheet contributions, which comprise the extended, coherent structural elements in well-structured proteins. In some cases further interpretations in terms of turns and specific helix and sheet segment types have developed. Only more limited applications of optical spectra to determination of tertiary structure have appeared, and these normally have used fluorescence or near-UV electronic circular dichroism (ECD) of aromatic residues to sense a change in the fold (Haas, 1995 Woody and Dunker, 1996). 

Fig. 29. Equilbrium unfolding of C40A/C82A/P27A (pseudo-wild-type) barstar monitored by A R, mean residue circular dichroism. Conditions for near-UV CD were 50 /xM protein in 50 mM Tris-HCl buffer, pH 8, 0.1 M KC1, path length 1 cm. (A) Urea-induced unfolding at 25°C at urea concentrations as indicated. (B) Cold-induced unfolding in...

Schaffer (149) has discussed the circular dichroism of octahedral Cr(III) and Co(III) complexes of the types tris(bidentate) and ds-bis(bidentate). The chirality can be thought of as arising from displacements of the donor atoms from orthoaxial positions, and the effects of such displacements can be treated using the AOM. 

In addition to the effect of mutations at Phe-82 on the stability of the cytochrome c active site, the intense, negative Soret Cotton effect in the circular dichroism spectrum of ferricytochrome c is profoundly affected by the presence of non-aromatic amino acid residues at this position [115]. Recent examination of six position-82 iso-l-ferricytochrome c mutants establishes that while Tyr-82 exhibits a Soret CD spectrum closely similar to that of the wild-type protein, the intensity of the negative Soret Cotton affect varies with the identity of the residue at this position in the order Phe > Tyr > Gly > Ser = Ala > Leu > He, though the Ser, Ala, He, and Leu variants have effectively no negative Soret Cotton effect [108]. 

While it is tempting to explain regulatory and cosolvent effects on the basis of conformational changes favorable or unfavorable to enzyme activity, it is much more difficult to demonstrate the actual involvement, amount, and structural details of such changes. Experimental evidence consists in most cases of bits and pieces provided by techniques such as absorption and fluorescence spectroscopy, circular dichroism, and magnetic circular dichroism. These tools work in solution (and, when desired, at subzero temperatures) to investigate not simply empty enzymes but enzyme—substrate intermediates. However, even with this information, the conformational basis of enzyme activity remains more postulated than demonstrated at the ball and stick level, and in spite of data about the number and sequence of intermediates, definition of their approximate nature, rate constants, and identification of the types of catalysis involved, full explanation of any particular reaction cannot be given and rests on speculative hypothesis. 

Quadrupole splitting (A q) correlates to electric field gradient and, based on model compounds, can identify some ligand types Can observe changes in ligand field induced by sample perturbation Can only detect iron sites Magnetic circular dichroism (MCD) spectra Require low temperature to observe (—2-70 K)... 

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