Carboxylic acid derivative biological

Chemistry of Thioesters and Acyl Phosphates Biological Carboxylic Acid Derivatives 817... 

Thiol Esters Biological Carboxylic Acid Derivatives 878... 

The discussion of acylation reactions in this chapter is focused on fluonnated carboxylic acid derivatives and their use to build up new fluorine-containing molecules of a general preparative interest Fifteen years ago, fluonnated carboxylic acids and their derivatives were used mainly for technical applications [/] Since then, an ever growing interest for selectively fluonnated molecules for biological applications [2, 3, 4, 5] has challenged many chemists to use bulk chemicals such as tnfluoroacetic acid and chlorodifluoroacetic acid as starting materials for the solution of the inherent synthetic problems [d, 7,, 9]... 

A third method of aldehyde synthesis is one that we ll mention here just briefly and then return to in Section 21.6. Certain carboxylic acid derivatives can be partially reduced to yield aldehydes. The partial reduction of an ester by dhsobutylaluminum hydride (DIBAH), for instance, is an important laboratory-scale method of aldehyde synthesis, and mechanistically related processes also occur in biological pathways. The reaction is normally carried out at —78 °C (dry-ice temperature) in toluene solution. 

Closely related to the carboxylic acids and nitriles discussed in the previous chapter are the carboxylic acid derivatives, compounds in which an acyl group is bonded to an electronegative atom or substituent that can net as a leaving group in a substitution reaction. Many kinds of acid derivatives are known, but we ll be concerned primarily with four of the more common ones acid halides, acid anhydrides, esters, and amides. Esters and amides are common in both laboratory and biological chemistry, while acid halides and acid anhydrides are used only in the laboratory. Thioesters and acyl phosphates are encountered primarily in biological chemistry. Note the structural similarity between acid anhydrides and acy) phosphates. 

Carboxylic acid derivatives are among the most widespread of all molecules, both in laboratory chemistry and in biological pathways. Thus, a study of them and their primary reaction—nucleophilic acyl substitution—is fundamental to understanding organic chemistry. We ll begin this chapter by first learning about carboxylic acid derivatives, and then we ll explore the chemistry of acyl substitution reactions. 

The aldehyde intermediate can be isolated if 1 equivalent of diisobutvl-aluminum hydride (D1BAH) is used as the reducing agent instead of LiAlH4. The reaction has to be carried out at -78 °C to avoid further reduction to the alcohol. Such partial reductions of carboxylic acid derivatives to aldehydes also occur in numerous biological pathways, although the substrate is either a thioester or acyl phosphate rather than an ester. 

Carboxylic acids can be transformed into a variety of carboxylic acid derivatives in which the carboxyl -OH group has been replaced by another substituent. Acid halides, acid anhydrides, esters, and amides arc the most common such derivatives in the laboratory thioesters and acyl phosphates are common in biological molecules. 

Until now, only few attempts were made to apply the ortho photocycloaddition to organic synthesis. Particular interest lies in the field of compounds possessing interesting biological activity (Sch. 22). The cyclohexane-1,3-dione carboxylic acid derivative 110 can be used as core structure of new herbicides [27,51,84]. Benzocyclobutenes 75a,b obtained... 

Hlectronically, we find that strongly polarized acyl compounds react more readily than less polar ones. I hus, add chlorides are the most reactive because the electronegative chlorine atom withdraws electrons from the carbonyl carbon, whereas amides are the least reactive. Although subtle, electrostatic potential maps of various carboxylic acid derivatives indicate the differences by the relative blueness on the C=0 carbons. Acyl phosphates are hard to place on this scale because they are not used in the laboratory, but in biological systems they appear to be somewhat more reactive than thioesters. 

Phosphoric acid derivatives can be conveniently discussed with the carboxylic acid derivatives, owing to their similar reaction mechanisms. The structural class is extremely important biologically, but few pharmaceutical examples within it exist. For discussions of hydrolytic reactions of the phosphoric acid derivatives, the reader is referred to the first edition of this encyclopedia. ... 

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