Bioinformatics metabolic pathway analysis

Rahman SA, Advani P, Schunk R et al. Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC). Bioinformatics 2005 21(7) 1189-1193. 

Metabolic pathways have been illustrated using simple diagrams since before the human genome project and related bioinformatics projects had begun. With the involvement of computer science techniques, however, systematic approaches to modeling metabolic pathways have progressed quickly, with various aims that range from metabolite analyses to pathway prediction and reconstruction (1-3). Systems analysis has come to incorporate... 

Kuffner, R., R. Zimmer, and T. Eengauer, Pathway analysis in metabolic databases via differential metabolic display (DMD). Bioinformatics, 2000. 16(9) p. 825-36. 

Unrean P, Trinh CT, Srienc F (2010) Rational design and construction of an efficient E. coli for production of diapolycopendioic acid. Metab Eng 12 112-122 Vijayasankaran N, Carlson R, Srienc E (2005) Metabolic pathway structures for recombinant protein synthesis in Escherichia coli. Appl Microbiol Biotechnol 68 737-746 von Kamp A, Schuster S (2006) Metatool 5.0 fast and flexible elementary modes analysis. Bioinformatics 22 1930-1931... 

Behre J, Wilhelm T, von Kamp A, Ruppin E, Schuster S (2008) Stmctuial robustness of metabolic networks with respect to multiple knockouts. J Theor Biol 252 433M41 Bell SL, Palsson BO (2005) Expa a program for calculating extreme pathways in biochemical reaction networks. Bioinformatics 21 1739-1740 Beurton-Aimar M, Beauvoit B, Monier A, Vallee F Dieuaide-Noubhani M, Colombie S (2011) Comparison between elementary flux modes analysis and 13c-metabolic fluxes measured in bacterial and plant cells. BMC Syst Biol 5 95... 

---