Relaxation constant, bath

If the coupling parameter (the Bath relaxation constant in HyperChem), t, is too tight (<0.1 ps), an isokinetic energy ensemble results rather than an isothermal (microcanonical) ensemble. The trajectory is then neither canonical or microcanon-ical. You cannot calculate true time-dependent properties or ensemble averages for this trajectory. You can use small values of T for these simulations ... 

If the Bath relaxation constant, t, is greater than O.I ps, you should be able to calculate dynamic properties, like time correlation functions and diffusion constants, from data in the SNP and/or CSV files (see Collecting Averages from Simulations on page 85). 

For a stable trajectory, use a Bath relaxation constant greater than 0.1 ps. A constant of 0.01 ps is too small and causes disturbances in a simulation... 

For a constant temperature simulation, a molecular system is coupled to a heat bath via a Bath relaxation constant (see Temperature Control on page 72). When setting this constant, remember that a small number results in tight coupling and holds the temperature closer to the chosen temperature. A larger number corresponds to weaker coupling, allowing more fluctuation in temper-... 

Berendsen et al. [H. I. C. Berendsen, I. P. M. Postma, W. F. van Gun-steren, A. di Nola, and I. R. Haak, J. Chem. Phys. 81, 3684 (1984)] have described a simple scheme for constant temperature simulations that is implemented in HyperChem. You can use this constant temperature scheme by checking the constant temperature check box and specifying a bath relaxation constant t. This relaxation constant must be equal to or bigger than the dynamics step size D/. If it is equal to the step size, the temperature will be kept as close to constant as possible. This occurs, essentially, by rescaling the velocities used to update positions to correspond exactly to the specified initial temperature. For larger values of the relaxation constant, the temperature is kept approximately constant by superimposing a first-order relaxation process on the simulation. That is ... 

Dynamic simulations were performed (after 10 ps equilibration) with a coupling to a thermal bath at 500 K. We used the scaled-velocity algorithm of Berendsen et al.,212 with a bath relaxation constant of 0.1 ps after equilibrium. 

For constant temperature dynamics where the constant temperature check box in the Molecular Dynamics Options dialog box is checked, the energy will not remain constant but will fluctuate as energy is exchanged with the bath. The temperature, depending on the value set for the relaxation constant, will approach con-stan cy. 

In the simplest case (single time constant), rs = C/G is the sample to thermal bath relaxation time. 

For an ideal gas and a diathemiic piston, the condition of constant energy means constant temperature. The reverse change can then be carried out simply by relaxing the adiabatic constraint on the external walls and innnersing the system in a themiostatic bath. More generally tlie initial state and the final state may be at different temperatures so that one may have to have a series of temperature baths to ensure that the entire series of steps is reversible. 

In a molecular dynamics calculation, you can add a term to adjust the velocities, keeping the molecular system near a desired temperature. During a constant temperature simulation, velocities are scaled at each time step. This couples the system to a simulated heat bath at Tq, with a temperature relaxation time of "r. The velocities arc scaled bv a factor X. where... 

If Lh c con Stan t Ictn pcratti re a Igori Lli rn is used in a trajectory analysis, then the initial conditions arc constantly being modified according to the sirn ulation of th c con stan t tern perattirc bath an d th e relaxation of th e m olecu lar system to that bath temperature, fhe effect of such a bath on a trajectory analysis is less studied than for th c sirn 11 lation of cqu i libriii m behavior. 

The simplest method that keeps the temperature of a system constant during an MD simulation is to rescale the velocities at each time step by a factor of (To/T) -, where T is the current instantaneous temperature [defined in Eq. (24)] and Tq is the desired temperamre. This method is commonly used in the equilibration phase of many MD simulations and has also been suggested as a means of performing constant temperature molecular dynamics [22]. A further refinement of the velocity-rescaling approach was proposed by Berendsen et al. [24], who used velocity rescaling to couple the system to a heat bath at a temperature Tq. Since heat coupling has a characteristic relaxation time, each velocity V is scaled by a factor X, defined as... 

Here, At is the size of the time step, Tp is a characteristic relaxation time, and Pg is the pressure of the external constant-pressure bath. The instantaneous pressure can be calculated as follows ... 

The main problem of elementary chemical reaction dynamics is to find the rate constant of the transition in the reaction complex interacting with its environment. This problem, in principle, is close to the general problem of statistical mechanics of irreversible processes (see, e.g., Blum [1981], Kubo et al. [1985]) about the relaxation of initially nonequilibrium state of a particle in the presence of a reservoir (heat bath). If the particle is coupled to the reservoir weakly enough, then the properties of the latter are fully determined by the spectral characteristics of its susceptibility coefficients. 

The role of two-phonon processes in the relaxation of tunneling systems has been analyzed by Silbey and Trommsdorf [1990]. Unlike the model of TLS coupled linearly to a harmonic bath (2.39), bilinear coupling to phonons of the form Cijqiqja was considered. In the deformation potential approximation the coupling constant Cij is proportional to (y.cUj. There are two leading two-phonon processes with different dependence of the relaxation rate on temperature and energy gap, A = (A Two-phonon emission prevails at low temperatures, and it is... 

Wangsness and Bloch16>17 were the first to give a quantum mechanical treatment of spin relaxation using the density matrix formalism. The system considered is a spin interacting with an external magnetic field (which we suppose here to be constant) and with a heat bath. The corresponding Hamiltonian is... 

The quantum alternative for the description of the vibrational degrees of freedom has been commented by Westlund et al. (85). The comments indicate that, to get a reasonable description of the field-dependent electron spin relaxation caused by the quantum vibrations, one needs to consider the first as well as the second order coupling between the spin and the vibrational modes in the ZFS interaction, and to take into account the lifetime of a vibrational state, Tw, as well as the time constant,T2V, associated with a width of vibrational transitions. A model of nuclear spin relaxation, including the electron spin subsystem coupled to a quantum vibrational bath, has been proposed (7d5). The contributions of the T2V and Tw vibrational relaxation (associated with the linear and the quadratic term in the Taylor expansion of the ZFS tensor, respectively) to the electron spin relaxation was considered. The description of the electron spin dynamics was included in the calculations of the PRE by the SBM approach, as well as in the framework of the general slow-motion theory, with appropriate modifications. The theoretical predictions were compared once again with the experimental PRE values for the Ni(H20)g complex in aqueous solution. This work can be treated as a quantum-mechanical counterpart of the classical approach presented in the paper by Kruk and Kowalewski (161). 

The renormalized contributions come from the influence of bath. The terms Dj represents the shift of the /-th mode in the bath for the m-th electronic level. The master equation (10), as it stands, holds true after relaxation process in the bath appears, so the contribution from the bath corresponds to relaxed bath states. It is worth mentioning that although the constant term disappears in the interaction term (6) for the vertical transition, it is... 

By using transient absorption spectroscopic techniques, time-resolved measurements of photo-induced interfacial ET with time-constants shorter than 100 fsec have become possible [51,52,58-60]. When ultrashort laser pulses are used in studying PIET, vibrational coherences (or vibrational wave packet) can often be observed and have indeed been observed in a number of dye-sensitized solar cell systems. This type of quantum beat has also been observed in ultrafast PIET in photosynthetic reaction center [22], It should be noted that when the PIET takes place in the time scale shorter than 100 fsec, vibrational relaxation between the system and the heat bath is slower than PIET this is the so-called vibrationally non-relaxed ET case, and it will be treated in this section. 

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