Amino acids trifunctional

FIGURE 1 Schematic representation of the use of trifunctional amino acids as monomeric starting materials for the synthesis of pseudopoly-(amino acids), (a) Polymerization via the C terminus and the side chain R. (b) Polymerization via the N terminus and the side chain R. (c) Polymerization via the C terminus and the N terminus. The wavy line symbolizes any suitable nonamide bond. See text for details. ... 

A convenient molecule from which to build trifunctionals is the amino acid, L-lysine. Its three functional groups, a-carboxy, a-amino, and e-amino, can be derivatized independently to contain three arms. Each arm can be designed to terminate in a complexing group able to participate in a particular type of conjugation reaction or affinity interaction. 

TRIFUNCTIONAL AMINO ACIDS WITH TWO DIFFERENT PROTECTORS... 

FIGURE 6.30 Approaches for the synthesis of monosubstituted trifunctional amino acids. (A) Monoesterification of dicarboxylic acids. (B) Aa-Alkoxycarbonylation of lysine through the e-benzylidene derivative [Bezas Zervas, 1963]. (C) SelectiveN -detritylation of ditrityl derivatives.138 (D) A- AI ko x y met hy 1 at 10 n of histidine by displacement of AP-substituents.137 Cbz-His(CH2OR)-OMe are obtained from Cbz-His(xAc)-OMe. = Acylating reagent. 

Dicyclohexylamine (10) is a base employed as counter ion for crystallizing acid-sensitive -protected amino acids and /V-protected amino acids that do not crystallize as the acids. Its use allows removal of unreacted substrate after /V-methylation of trifunctional amino acid derivatives (see Section 8.13). 

Collagen cross-links. Besides amide bonds between amino acids in the same a chain, bonds between amino acid side chains of different a chains can form "cross-links". These bonds originate from enzymatically-oxidized side chains of lysine and hydroxylysine residues. The oxidized residues react with other lysine and hydroxylysine residues, forming difunctional products. Reactions of such products with oxidized lysine or hydroxylysine yield trifunctional cross-links (Reiser et al., 1992). 

Suyama K, Yamazaki K and Nakamura P (1995) Gyclopentenosine, trifunctional crosslinking amino acid of elastin and collagen, characterization and distribution. Spec Publ - R Soc Chem 151, 425. 

Taking advantage of the side-chain linkage of C-terminal trifunctional amino acids to solid supports, related iV-mono(alkyl)amides or Ai-bis(alkyl)amides serve for the production of C-terminally lipidated peptides. So far, this approach has been reported only for the synthesis of a C-terminally mono-alkylated peptide.1 1 ... 

PG1 = 1st order protecting group PG2 = 2nd order protecting group PG3 = 3rd order protecting group R1,R2 = side-chain of trifunctional amino acid... 

RIS theory, in the form appropriate for branched molecules, is used to calculate the mean-square unperturbed radius of gyration, < s2>0, for cross-linked polyglycine, poly(L-alanine),poly(L-proline),poly(i-alanyl-D-alanine),poly(i.-prolyl-L-pro lylglycine),poly(L-prolyl-i.-alanylglycine ,poly(glycyl-L-alanyl-L-pro line), andpoly(L-aianyl-L-alanylgIycine).Thecentral amino acid residue in each polypeptide chain is replaced by the L-cysteinyl residue involved in cross-link formation. Each cross-linked molecule is considered to contain two trifunctional branch points, the a-carbon atoms of the two... 

Replacement of the 2-naphthyl groups by 2-dimethylaminomethylphenyl groups in H2(npOEP) also led to a rhodium porphyrin being able to extract leucine from water, however, the situation is complicated by dimerization of the rhodium porphyrin due to intermolecular amine-rhodium bonding [286]. A rhodium complex of a trifunctional chiral bis(2-hydroxynaphthyl)porphyrin related to the above-mentioned RhCl(npOEP) system was used to separate diastereomers formed via two-point fixation of amino acids [287],... 

Although it is reported that the U-5C-4CR can work well with nucleophiles other than methanol, such as primary or secondary amines, the only examples reported in the literature are those where trifunctional a-aminoacids such as lysine [67] or homoserine [66] or bifunctional aldehydes such as glycolaldehyde [65] are employed. In these cases, the side-chain amino or hydroxy group acts as the nucleophile and opens the cyclic intermediate generating the corresponding lactams or lactones. A less nucleophilic solvent such as trifluoroethanol is usually employed, in order to maximize the intramolecular attack. The observed stereoselectivities are, apart from a few examples [66], usually not very high this could be due to different factors (a) the side chains of the a-amino acids are not very bulky (b) the intramolecular nucleophilic attack could be faster than the methanol attack and the cyclic intermediate could not equilibrate to the thermodynamically favored isomer (c) the intramolecular nucleophilic attack on the more stable diastereoiso-meric cyclic intermediate could be kinetically less favored. 

These findings can be of considerable impact for the conventional strategies of peptide synthesis. The segment condensation of medium-sized peptides with low solubility to larger peptide chains may result in the increased solubility of the reaction product due to conformational transitions. Whenever it is possible, amino acid residues with low tendencies for p-strueture formation should be inserted towards the middle of the peptide segments. In this respect, the prediction of secondary structures can be a useful tool in establishing the most efficient path for peptide synthesis. To this end, experimental elucidation of the conformational preferences of side-chain-protected trifunctional amino acids is of much relevance 250). 

YLRPDWHQA-amide encompassing most trifunctional native amino acids. 

YLRPDWHQA-Amide Encompassing Most Trifunctional Amino Acids... 

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