Amide frequency

Fig. 1. Effect of amide frequency on the melting points of AB-type (x ) and AABB-type ( ) polyamides. The numbers on the curves indicate the specific...

I—III Table XXII gives similar data for )3 turns of types I —III. In Table XXIII we present the results for the type II turns with Ala in the third position. The effects of variations in dihedral angles on the amide frequencies are complex, and rather than considering them in detail the original paper should be consulted for specifics (Krimm and Bandekar, 1980). 

The significant variation of amide frequencies with dihedral angles in the turn (Krimm and Bandekar, 1980), however, raises the general question of whether )3-turn frequencies can be considered to be as diagnostic as those of the a helix and )3 sheet, particularly in proteins where relatively large departures from standard values of and tjf can occur. Incidentally, as can be seen from Table XXI, the unperturbed amide I... 

Calculated and Observed Amide Frequencies of Type II p Turn Pro-Leu-Gly-NIl2... 

The normal-mode calculation produced 597 frequencies and eigenvectors. We represent the former in Fig. 33 by giving a histogram of the calculated frequencies below 1700 cm", plotting the number of normal modes in each 5-cm interval. Such a density of vibrational states, which can be probed by inelastic neutron scattering (Jacrot et al., 1982), is not observed directly by IR or Raman. As we noted, and will consider further below, the IR spectrum is determined by the dji/dQ in each normal mode, which remains to be calculated. Since hydrogen bonding and TDC have also not been included in this calculation, the values of the amide frequencies and the distribution of the low-frequency modes cannot be considered finalized as yet. 

Hydrogen bonding is more favorable in the nylons with an even-numbered methylene spacer. In feet, the even numbered nylons are highly crystalline but the odd numbered are often amorphous. In contrast to the AABB-series, aliphatic AB nylons with odd number of methylene units exhibit higher than the even numbered homologues at similar numbers of methylene units and comparable amide frequency. 

The observations in the delipidated PM could serve as an additional evidence for mentioned explanation.Firstly, its water adsorption was higher than native PM.The possible reason for it is that without PL the BR exists in extended conformation with more polar and charged groups exposed.Secondly,it was short of distinct second step change of Amide frequency with hydration.Both facts stand for that the existence of PL and its hydration are essential for conformation shift of BR. 

MM2 was, according the web site of the authors, released as MM2 87). The various MM2 flavors are superseded by MM3, with significant improvements in the functional form [10]. It was also extended to handle amides, polypeptides, and proteins [11]. The last release of this series was MM3(%). Further improvements followed by starting the MM4 series, which focuses on hydrocarbons [12], on the description of hyperconjugative effects on carbon-carbon bond lengths [13], and on conjugated hydrocarbons [14] with special emphasis on vibrational frequencies [15]. For applications of MM2 and MM3 in inorganic systems, readers are referred to the literature [16-19]. 

Hydrogen bonding to a carbonyl group causes a shift to lower frequency of 40 to 60 cm k Acids, amides, enolized /3-keto carbonyl systems, and o-hydroxyphenol and o-aminophenyl carbonyl compounds show this effect. All carbonyl compounds tend to give slightly lower values for the carbonyl stretching frequency in the solid state compared with the value for dilute solutions. 

Spectral Characteristics. The iafrared stretching frequency of the penicillin P-lactam carbonyl group normally occurs at relatively high frequencies (1770 1815 cm ) as compared to the absorptions for the secondary amide (1504-1695 cm ) and ester (1720-1780 cm ) carbonyl groups. 

The higher frequencies of the /3-lactam carbonyl absorption in fused systems has been attributed to increased inhibition of amide resonance as the /3-lactam ring becomes less planar (b-72mI50900 p. 303). For the 3-cephems (61) there is also the possibility of enamine resonance which could further reduce the ability of the /3-lactam nitrogen to contribute to amide resonance. 

The role of IR spectroscopy in the early penicillin structure studies has been described (B-49MI51103) and the results of more recent work have been summarized (B-72MI51101). The most noteworthy aspect of a penicillin IR spectrum is the stretching frequency of the /3-lactam carbonyl, which comes at approximately 1780 cm" This is in contrast to a linear tertiary amide which absorbs at approximately 1650 cm and a /3-lactam which is not fused to another ring (e.g. benzyldethiopenicillin), which absorbs at approximately 1740 cm (the exact absorption frequency will, of course, depend upon the specific compound and technique of spectrum determination). The /3-lactam carbonyl absorptions of penicillin sulfoxides and sulfones occur at approximately 1805 and 1810 cm respectively. The high absorption frequency of the penicillin /3-lactam carbonyl is interpreted in terms of the increased double bond character of that bond as a consequence of decreased amide resonance, as discussed in the X-ray crystallographic section. Other aspects of the penicillin IR spectrum, e.g. the side chain amide absorptions at approximately 1680 and 1510 cm and the carboxylate absorption at approximately 1610 cm are as expected. 

The whole concept of direct methylation has recently been critically reviewed and rejected by Gompper as a method to study tautomerism. The difference in the proportions of the two methyl derivatives produced w hen diazomethane is in excess, or the reverse, has now been ascribed to the relative importance of the Sn and Sn reactions of the tautomeric compound with diazomethane. The proportions of N- and 0-methyl derivatives formed by the reaction of cyclic amides with diazomethane has been related to the infrared vC—O frequencies. ... 

A criterion for the position of the extent of the mesomerism of type 9 is given by the bond order of the CO bond, a first approximation to W hich can be obtained from the infrared spectrum (v C=0). Unfortunately, relatively little is known of the infrared spectra of amide anions. How-ever, it can be assumed that the mesomeric relationships in the anions 9 can also be deduced from the infrared spectra of the free amides (4), although, of course, the absolute participation of the canonical forms a and b in structures 4 and 9 is different. If Table I is considered from this point of view, the intimate relationship betw-een the position of the amide band 1 (v C=0) and the orientation (0 or N) of methylation of lactams by diazomethane is unmistakeable. Thus the behavior of a lactam tow ard diazomethane can be deduced from the acidity (velocity of reaction) and the C=0 stretching frequency (orientation of methylation). Three major regions can be differentiated (1) 1620-1680 cm h 0-methylation (2) 1680-1720 cm i, O- and A -methylation, w ith kinetic dependence and (3) 1730-1800 em , A -methylation, The factual material in Table I is... 

Infrared radiation, electromagnetic spectrum and, 419, 422 energy of. 422 frequencies of, 422 wavelengths of, 422 Infrared spectroscopy, 422-431 acid anhydrides, 822-823 acid chlorides, 822-823 alcohols. 428, 632-633 aldehydes, 428. 730-731 alkanes, 426-427 alkenes, 427 alkynes, 427 amides. 822-823 amines, 428, 952 ammonium salts, 952-953 aromatic compound, 427-428, 534 bond stretching in, 422... 

The strategy for the asymmetric reductive acylation of ketones was extended to ketoximes (Scheme 9). The asymmetric reactions of ketoximes were performed with CALB and Pd/C in the presence of hydrogen, diisopropylethylamine, and ethyl acetate in toluene at 60° C for 5 days (Table 20) In comparison to the direct DKR of amines, the yields of chiral amides increased significantly. Diisopropylethylamine was responsible for the increase in yields. However, the major factor would be the slow generation of amines, which maintains the amine concentration low enough to suppress side reactions including the reductive aminafion. Disappointingly, this process is limited to benzylic amines. Additionally, low turnover frequencies also need to be overcome. 

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