Numerical accuracy

There are three typical methods to obtain the RDF radiation scattering experiments, computer simulation, and frquid state theories such as DFTs and integral equation methods. Whereas the first two methods allow us to construct the EOS of the highest possible accuracy, numerous efforts are needed to collect the measured results at different particular thermodynamic state (namely, different sets of composition and temperature). On the... 

Because of the existence of numerous isomers, hydrocarbon mixtures having a large number of carbon atoms can not be easily analyzed in detail. It is common practice either to group the constituents around key components that have large concentrations and whose properties are representative, or to use the concept of petroleum fractions. It is obvious that the grouping around a component or in a fraction can only be done if their chemical natures are similar. It should be kept in mind that the accuracy will be diminished when estimating certain properties particularly sensitive to molecular structure such as octane number or crystallization point. 

In 1972, Soave published a method of calculating fugacities based on a modification of the Redlich and Kwong equation of state which completely changed the customary habits and became the industry standard. In spite of numerous attempts to improve it, the original method is the most widespread. For hydrocarbon mixtures, its accuracy is remarkable. For a mixture, the equation of state is ... 

By substituting these expressions into Eq. (55), one can see after some algebra that ln,g(x, t) can be identified with lnx (t) + P t) shown in Section III.C.4. Moreover, In (f) = 0. It can be verified, numerically or algebraically, that the log-modulus and phase of In X-(t) obey the reciprocal relations (9) and (10). In more realistic cases (i.e., with several Gaussians), Eq. (56-58) do not hold. It still may be due that the analytical properties of the wavepacket remain valid and so do relations (9) and (10). If so, then these can be thought of as providing numerical checks on the accuracy of approximate wavepackets. 

The excellent agreement of the results of HCR ab initio studies with the corresponding experimental findings clearly shows that the strongest influence on the numerical accuracy of the vibronic levels have effects outside of the R-T effect, that is, primarly the replacement of the effective bending approaches employed in previous works by a full 3D treatment of the vibrational motions (for an analysis of this matter see, e.g., [17]). Let us note, however, that such a... 

The many approaches to the challenging timestep problem in biomolecular dynamics have achieved success with similar final schemes. However, the individual routes taken to produce these methods — via implicit integration, harmonic approximation, other separating frameworks, and/or force splitting into frequency classes — have been quite different. Each path has encountered different problems along the way which only increased our understanding of the numerical, computational, and accuracy issues involved. This contribution reported on our experiences in this quest. LN has its roots in LIN, which... 

Hence, we use the trajectory that was obtained by numerical means to estimate the accuracy of the solution. Of course, the smaller the time step is, the smaller is the variance, and the probability distribution of errors becomes narrower and concentrates around zero. Note also that the Jacobian of transformation from e to must be such that log[J] is independent of X at the limit of e — 0. Similarly to the discussion on the Brownian particle we consider the Ito Calculus [10-12] by a specific choice of the discrete time... 

In order to compare the efficiency of the SISM with the standard LFV method, we compared computational performance for the same level of accuracy. To study the error accumulation and numerical stability we monitored the error in total energy, AE, defined as... 

These various techniques were recently applied to molecular simulations [11, 20]. Both of these articles used the rotation matrix formulation, together with either the explicit reduction-based integrator or the SHAKE method to preserve orthogonality directly. In numerical experiments with realistic model problems, both of these symplectic schemes were shown to exhibit vastly superior long term stability and accuracy (measured in terms of energy error) compared to quaternionic schemes. 

The preferable theoretical tools for the description of dynamical processes in systems of a few atoms are certainly quantum mechanical calculations. There is a large arsenal of powerful, well established methods for quantum mechanical computations of processes such as photoexcitation, photodissociation, inelastic scattering and reactive collisions for systems having, in the present state-of-the-art, up to three or four atoms, typically. " Both time-dependent and time-independent numerically exact algorithms are available for many of the processes, so in cases where potential surfaces of good accuracy are available, excellent quantitative agreement with experiment is generally obtained. In addition to the full quantum-mechanical methods, sophisticated semiclassical approximations have been developed that for many cases are essentially of near-quantitative accuracy and certainly at a level sufficient for the interpretation of most experiments.These methods also are com-... 

Computational issues that are pertinent in MD simulations are time complexity of the force calculations and the accuracy of the particle trajectories including other necessary quantitative measures. These two issues overwhelm computational scientists in several ways. MD simulations are done for long time periods and since numerical integration techniques involve discretization errors and stability restrictions which when not put in check, may corrupt the numerical solutions in such a way that they do not have any meaning and therefore, no useful inferences can be drawn from them. Different strategies such as globally stable numerical integrators and multiple time steps implementations have been used in this respect (see [27, 31]). 

All three schemes, the Benson, the Laidler, and the Allen scheme, use four structure contributions for the estimation of thermochemical data of alkanes. As might be guessed, they are numerically equivalent all three schemes provide the same accuracy. This is shown below by Eqs. (7)-(10) for the interconversion of the various contributions. 

Step size is critical in all sim tilation s. fh is is th c iricrcm en t for in tc-grating th c equation s of motion. It uitim atcly deterrn in cs the accuracy of the numerical integration. For rn olecu les with high frequency motion, such as bond vibrations that involve hydrogens, use a small step size. 

All numerical computations inevitably involve round-off errors. This error increases as the number of calculations in the solution procedure is increased. Therefore, in practice, successive mesh refinements that increase the number of finite element calculations do not necessarily lead to more accurate solutions. However, one may assume a theoretical situation where the rounding error is eliminated. In this case successive reduction in size of elements in the mesh should improve the accuracy of the finite element solution. Therefore, using a P C" element with sufficient orders of interpolation and continuity, at the limit (i.e. when element dimensions tend to zero), an exact solution should be obtaiiied. This has been shown to be true for linear elliptic problems (Strang and Fix, 1973) where an optimal convergence is achieved if the following conditions are satisfied ... 

The comparison between the finite element and analytical solutions for a relatively small value of a - 1 is shown in Figure 2.25. As can be seen the standard Galerkin method has yielded an accurate and stable solution for the differential Equation (2.80). The accuracy of this solution is expected to improve even further with mesh refinement. As Figmre 2.26 shows using a = 10 a stable result can still be obtained, however using the present mesh of 10 elements, for larger values of this coefficient the numerical solution produced by the standard... 

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