Uracils rearrangement

Alkenes, perfluoro-cycloadditions to benzyl azide, 60, 35 pyridine imines and ylids, 60, 36 Alkenes, perfluoro-, as heterocyclic precursors, 59, 10 Alkylation, free-radical, of 1,3-dimethyluracil, 55, 227 A-Alkylation, [ 1,2,4]triazolo[ 1,5-u)-pyrimidines, 57, 110 Alkynes, photocycloaddition to uracils, rearrangement with HCNO elimination, 55, 149 Alkynes, ethoxy-, cyclaoddition to hexafluoroacetone azine, 60, 32 Alkynes, perfluoro-, as heterocyclic precursors, 59, 10 Allenes... 

Posttranslational modification of preformed polynucleotides can generate additional bases such as pseudouridine, in which D-ribose is linked to C-5 of uracil by a carbon-to-carbon bond rather than by a P-N-glycosidic bond. The nucleotide pseudouridylic acid T arises by rearrangement of UMP of a preformed tRNA. Similarly, methylation by S-adenosylmethionine of a UMP of preformed tRNA forms TMP (thymidine monophosphate), which contains ribose rather than de-oxyribose. 

Pyrimidine annulated heterocycles fused at positions 5 and 6 to uracil were synthesized via a three-step sequence starting from uracil 63 [20]. Firstly, the reaction with 3-bromocyclohexene gave the AT-allyl-vinyl core system 64 in 80% yield. Upon heating 64 in EtOH in the presence of HCl, aza-Claisen rearrangement gave rise to the C-cyclohexenyl uracil 65 in 38% yield. Final bromination ( 66) and dehydrogenation steps ( 67) allowed synthesis of the desired tricyclic fused uracil systems (Scheme 15). 

Additionally, uracil 6-iminophosphorane, isocyanate, and o-methyl-e-caprolactim ether join to form the intensely yellow pyrimido[4 5 4,5] pyrimido[6,l-n]azepine (360), as shown in Scheme 130. Upon ring closure, methanol is spontaneously eliminated. Diethyl azodicarboxylate affords with the other components pyrimido[4,5-e][l,2,4]triazoline (361), which is closely related to the alkaloid isofervenuline. The imidazo[5, -/][ ,2,4]tria-zine (362) results in a known Michael-type rearrangement sequence by treatment with diethyl acetylenedicarboxylate (86JOC149, 86JOC2787) in this latter case, the Michael-type addition occurs much faster than the expected three-component reaction [93H(35)1055]. 

Fig. 15. Valence Fourier difference map for uracil in the least-squares plane of the C, N, and O atoms. Rearranged from ref. 398.

Pseudouridine is formed by enzymatic rearrangement of uridine in the original transcript (Eq. 28-3). It can form a base pair with adenine in the same manner as does uracil. Pseudouridine is found not only in tRNA but also in several places in both large and small ribo-somal RNA subunits. For example, it is present at position 516 in the E. coli 16S RNA,364 at a specific position in the 23S RNA, and at many more locations in eukaryotic rRNA. 

Uracil-type compounds are insoluble in common organic solvents. Radicals R4 in 168 have been used to permit a more facile allylation or rearrangement to 167, as shown in Scheme 37). Further transformation into the amide functional group permits preparation of 169, and finally 170 (93ACS72). 

Alkylation of hydroxyazines follows the usual azine behavior with preference for N-alkylation as in the fused hydroxypyridine (11) (72AP833). In the fused uracil (12), using diazomethane or dimethyl sulfate, a mixture of N,N-dimethylated (13) and N,0-dimethy-lated (14) products is obtained. On heating the mixture in acetylacetone in the presence of sodium iodide, the O-methyl isomer is converted into its N-isomer, a type of rearrangement well established in azines (67T675). 

The pyrimidine nucleobases have the highest quantum yields for photoreactivity, with thymine uracil > cytosine. The purine nucleobases have much lower quantum yields for photochemistry, but can be quite reactive in the presence of oxygen. As can be seen from Figure 9-3, thymine forms primarily cyclobutyl photodimers (ToT) via a [2ir + 2tt cycloaddition, with the cis-syn photodimer most prevalent in DNA. This is the lesion which is found most often in DNA and has been directly-linked to the suntan response in humans [65]. A [2Tr + 2Tr] cycloaddition reaction between the double bond in thymine and the carbonyl or the imino of an adjacent pyrimidine nucleobase can eventually yield the pyrimidine pyrimidinone [6 1]-photoproduct via spontaneous rearrangement of the initially formed oxetane or azetidine. This photoproduct has a much lower quantum yield than the photodimer in both dinucleoside monophosphates and in DNA. Finally, thymine can also form the photohydrate via photocatalytic addition of water across the C5 = C6 bond. 

W-Cyclopent[c]isoxazoles, 3a,4,5,6-tetrahydro-, 56, 264, 60, 310, 311 Cyclopropa-fused uracils, formation and rearrangement, 55, 196 Cyclopropanation, of... 

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