Transition state theory stability

We have just discussed several common strategies that enzymes can use to stabilize the transition state of chemical reactions. These strategies are most often used in concert with one another to lead to optimal stabilization of the binary enzyme-transition state complex. What is most critical to our discussion is the fact that the structures of enzyme active sites have evolved to best stabilize the reaction transition state over other structural forms of the reactant and product molecules. That is, the active-site structure (in terms of shape and electronics) is most complementary to the structure of the substrate in its transition state, as opposed to its ground state structure. One would thus expect that enzyme active sites would bind substrate transition state species with much greater affinity than the ground state substrate molecule. This expectation is consistent with transition state theory as applied to enzymatic catalysis. 

Tetrahedral intermediates, derived from carboxylic acids, spectroscopic detection and the investigation of their properties, 21, 37 Topochemical phenomena in solid-state chemistry, 15, 63 Transition state structure, crystallographic approaches to, 29, 87 Transition state structure, in solution, effective charge and, 27, 1 Transition state structure, secondary deuterium isotope effects and, 31, 143 Transition states, structure in solution, cross-interaction constants and, 27, 57 Transition states, the stabilization of by cyclodextrins and other catalysts, 29, 1 Transition states, theory revisited, 28, 139... 

Transition stale structure, secondary deuterium isotope effects and, 31, 143 Transition states, structure in solution, cross-interaction constants and, 27, 57 Transition states, the stabilization of by cyclodextrins and other catalysts, 29, 1 Transition states, theory revisited, 28, 139... 

Another arena for the application of stochastic frictional approaches is the influence of ionic atmosphere relaxation on the rates of reactions in electrolyte solutions [19], To gain perspective on this, we first recall the early and often quoted triumph of TST for the prediction of salt effects, in connection with Debye-Hiickel theory, for reaction rates In kTST varies linearly with the square root of the solution ionic strength I, with a sign depending on whether the charge distribution of the transition state is stabilized or destabilized by the ionic atmosphere compared to the reactants. 

Using statistical-dynamical methods and transition state theory, Zhang and co workers demonstrated that excited carbonyls dissociate promptly to prodnce OH radicals (11%) or isomerize to form dioxirane (32%) or are collisionally stabilized (57%) . 

Important milestones in the rationalization of enzyme catalysis were the lock-and-key concept (Fischer, 1894), Pauling s postulate (1944) and induced fit (Koshland, 1958). Pauling s postulate claims that enzymes derive their catalytic power from transition-state stabilization the postulate can be derived from transition state theory and the idea of a thermodynamic cycle. The Kurz equation, kaJkunat Ks/Kt, is regarded as the mathematical form of Pauling s postulate and states that transition states in the case of successful catalysis must bind much more tightly to the enzyme than ground states. Consequences of the Kurz equation include the concepts of effective concentration for intramolecular reactions, coopera-tivity of numerous interactions between enzyme side chains and substrate molecules, and diffusional control as the upper bound for an enzymatic rate. 

The distinction between kinetic and thermodynamic stability is important and is explained by the concept of the free energy of activation necessary to convert the substrate to its transition state. In order for the substrate to form products, its internal free energy must exceed a certain value i.e., it must surmount an energy barrier. The energy barrier is that of the free energy of the transition state, AG. The transition-state theory of reaction rates introduced by H. Eyring relates the rate of the reaction to the magnitude of AG. ... 

---