Thioesters reactivity

Chemical ligation methods are typically compatible with a wide range of reaction conditions. However, it is important to note that in addition to optimizing ligation rates, maintenance of the chemoselectivity of the reaction is critical. As a result, native chemical ligation is typically performed at a PH of 6.5-8.0 at 25-40°C to avoid the possibility of unwanted thioester reactivity such as aminolysis, hydrolysis, or epimerization of the C-terminal amino acid. To maintain pH control in the presence of high concentrations... 

Thioesters Like chlorine sulfur is a third row element with limited ability to donate a pair of 3p electrons into the carbonyl tt system With an electronegativ ity that IS much less than Cl or O however its destabilizing effect on the carbonyl group IS slight and thioesters he m the middle of the group of carboxylic acid derivatives m respect to reactivity... 

As we saw m Chapter 20 thioesters are more reactive than ordinary esters toward nucleophilic acyl substitution They also contain a greater proportion of enol at equilib rmm Both properties are apparent m the properties of acetyl coenzyme A In some reactions it is the carbonyl group of acetyl coenzyme A that reacts m others it is the a carbon atom... 

Electronically, we find that strongly polarized acyl compounds react more readily than less polar ones. Thus, acid chlorides are the most reactive because the electronegative chlorine atom withdraws electrons from the carbonyl carbon, whereas amides are the least reactive. Although subtle, electrostatic potential maps of various carboxylic add derivatives indicate the differences by the relative blueness on the C-O carbons. Acyl phosphates are hard to place on this scale because they are not used in the laboratory, but in biological systems they appear to be somewhat more reactive than thioesters. 

As a consequence of these reactivity differences, it s usually possible to convert a more reactive acid derivative into a less reactive one. Acid chlorides, foi instance, can be directly converted into anhydrides, thioesters, esters, and amides, but amides can t be directly converted into esters, thioesters, anhydrides, or acid chlorides. Remembering the reactivity order is therefore a way tc keep track of a large number of reactions (Figure 21.2). Another consequence, a noted previously, is that only acyl phosphates, thioesters, esters, and amides are... 

The reactivity of an acid derivative toward substitution depends both on the steric environment near the carbonyl group and on the electronic nature of the substituent, Y. The reactivity order is acid halide > acid anhydride > thioester > ester > amide. 

The mechanism of the C02 transfer reaction with acetyl CoA to give mal-onyl CoA is thought to involve C02 as the reactive species. One proposal is that loss of C02 is favored by hydrogen-bond formation between the A -carboxy-biotin carbonyl group and a nearby acidic site in the enzyme. Simultaneous deprotonation of acetyl CoA by a basic site in the enzyme gives a thioester eno-late ion that can react with C02 as it is formed (Figure 29.6). 

As an alternative to lithium enolates. silyl enolates or ketene acetals may be used in a complementary route to pentanedioates. The reaction requires Lewis acid catalysis, for example aluminum trifluoromethanesulfonate (modest diastereoselectivity with unsaturated esters)72 74 antimony(V) chloride/tin(II) trifluoromethanesulfonate (predominant formation of anti-adducts with the more reactive a,/5-unsaturated thioesters)75 montmorillonite clay (modest to good yields but poor diastereoselectivity with unsaturated esters)76 or high pressure77. 

Methyl 4-[2-(ethylthiocarbonyl)ethenyl]cinnamate (3 SMe) crystallizes into a typical a-translation-type packing structure in which the distances between the ethylenic double bonds are 3.988 A and 4.067 A, respectively. However, the 3 SMe crystal is entirely photostable even though it should be photoreactive based on the topochemical rule (Sukegawa, 1991). Several examples of exceptionally photostable diolefin crystals have been found in compounds having a thioester moiety. Such anomalous behaviour of crystals such as 2 OMe and 3 SMe cannot be explained simply in terms of the topochemical rule since this rule involves only the positional relationship between the reactive olefin pair. 

Chattopadhaya and co-workers [162] recently reported another approach used to avoid some of the drawbacks associated with the use of FPs. The authors described a small molecule-based procedure that makes use of the unique reactivity between the cysteine residue at the N-terminus of a target protein and cell-permeable, thioester-based small molecule probes resulting in site-specific, covalent tagging of proteins. 

Williams and Ibrahim, 1981). Other nucleophiles also are reactive. Sulfhydryl groups may attack the active species and form thioester linkages, although these are not as stable as the bond formed with an amine. 

Peptides typically are prepared for this ligation process using a-alkyl thioesters, because they are simple to make at the time of peptide synthesis. However, due to the relatively slow reaction kinetics of alkyl thioesters, most native chemical ligation processes have been catalyzed through the use of thiol compound additives, such as benzyl mercaptan or thiophenol (Dawson et al., 1997). These compounds react with the initial a-alkyl thioester to form another intermediate, an aryl thioester, which is more reactive toward the N-terminal cysteine on the other peptide to be coupled. A study... 

However, if the expressed protein is treated on the affinity support using thiophenol, this also will release the protein and result in a phenylthioester at its C-terminal, which is the reactive intermediate imminendy suitable for native chemical ligation. Treatment of this activated thioester protein with a N-terminal cysteine peptide induces the native chemical ligation reaction and couples the peptide to the expressed protein through an amide bond (Severinov and Muir, 1998) (Figure 17.27). 

Insertion of carbon monoxide into Csp2—Zr bonds occurs readily at ambient temperatures or below to produce a,(5-unsaturated, reactive acyl zirconocene derivatives [27—29]. Early work by Schwartz demonstrated the potential of such intermediates in synthesis [5d], as they are highly susceptible to further conversions to a variety of carbonyl compounds depending upon manipulation. More recently, Huang has shown that HC1 converts 16 to an enal, that addition of a diaryl diselenide leads to selenoesters, and that exposure to a sulfenyl chloride gives thioesters (Scheme 4.11) [27,28]. All are obtained with (F)-stereochemistry, indicative of CO insertion with the expected retention of alkene geometry. 

Boelsterli UA. Xenobiotic acyl glucuronides and acyl CoA thioesters as protein-reactive metabolites with the potential to cause idiosyncratic drug reactions. Curr Drug Metab 2002 3(4) 439-450. 

Because of their previous findings that a,/l-unsaturated thioesters were more reactive than their ester counterparts in Diels-Alder reactions85, Hart and coworkers86 performed a systematic study of the cycloaddition reactions of a,/l-unsaturated thioesters and a,ft-unsaturated selenoesters with several dienes. Thermal reactions were compared with Lewis acid catalyzed reactions at room temperature (equation 28 and Table 2). The results clearly demonstrated that use of a Lewis acid enhanced the regioselectivity (entries 1 vs 2, 3 vs 4, 5 vs 6 and 7 vs 8) as well as the endo (with respect to the thioester or selenoester group) selectivity (entries 5 vs 6 and 7 vs 8). 

Thioesters play a paramount biochemical role in the metabolism of fatty acids and lipids. Indeed, fatty acyl-coenzyme A thioesters are pivotal in fatty acid anabolism and catabolism, in protein acylation, and in the synthesis of triacylglycerols, phospholipids and cholesterol esters [145], It is in these reactions that the peculiar reactivity of thioesters is of such significance. Many hydrolases, and mainly mitochondrial thiolester hydrolases (EC 3.1.2), are able to cleave thioesters. In addition, cholinesterases and carboxylesterases show some activity, but this is not a constant property of these enzymes since, for example, carboxylesterases from human monocytes were found to be inactive toward some endogenous thioesters [35] [146], In contrast, allococaine benzoyl thioester was found to be a good substrate of pig liver esterase, human and mouse butyrylcholinesterase, and mouse acetylcholinesterase [147],... 

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