The FeMo-Cofactor

The VFe protein also has the equivalent of P-cluster pairs which have similar properties to those found in the MoFe protein (159). No information is available on whether P-cluster pairs exist in the FeFe protein, but because of the relatively high sequence identity and the similar genetic basis of its biosynthesis, the occurrence seems highly likely. The catalytic role assigned to the P-cluster pair involves accepting electrons from the Fe protein for storage and future deUvery to the substrate via the FeMo-cofactor centers. As of this writing (ca early 1995), this role has yet to be proved. 

Fig. 7. View of the FeMo-cofactor prosthetic group of the nitrogenase MoFe protein with some of the surrounding amino acid residues where ( ) represents the molybdenum coordinated to a-His-442 and homocitrate (at the top), ( ) represents the iron, interspersed with the sulfur (O) and carbon...

Although FeMo-cofactor is clearly knpHcated in substrate reduction cataly2ed by the Mo-nitrogenase, efforts to reduce substrates using the isolated FeMo-cofactor have been mosdy equivocal. Thus the FeMo-cofactor s polypeptide environment must play a critical role in substrate binding and reduction. Also, the different spectroscopic features of protein-bound vs isolated FeMo-cofactor clearly indicate a role for the polypeptide in electronically fine-tuning the substrate-reduction site. Site-directed amino acid substitution studies have been used to probe the possible effects of FeMo-cofactor s polypeptide environment on substrate reduction (163—169). Catalytic and spectroscopic consequences of such substitutions should provide information concerning the specific functions of individual amino acids located within the FeMo-cofactor environment (95,122,149). 

Preparation and Reactions of the FeMo Cofactor Model Clusters... 

The mechanism and sequence of events that control delivery of protons and electrons to the FeMo cofactor during substrate reduction is not well understood in its particulars.8 It is believed that conformational change in MoFe-protein is necessary for electron transfer from the P-cluster to the M center (FeMoco) and that ATP hydrolysis and P release occurring on the Fe-protein drive the process. Hypothetically, P-clusters provide a reservoir of reducing equivalents that are transferred to substrate bound at FeMoco. Electrons are transferred one at a time from Fe-protein but the P-cluster and M center have electron buffering capacity, allowing successive two-electron transfers to, and protonations of, bound substrates.8 Neither component protein will reduce any substrate in the absence of its catalytic partner. Also, apoprotein (with any or all metal-sulfur clusters removed) will not reduce dinitrogen. 

As we will see in subsequent chapters, many metalloproteins have their metal centres located in organic cofactors (Lippard and Berg, 1994), such as the tetrapyrrole porphyrins and corrins, or in metal clusters, such as the Fe-S clusters in Fe-S proteins or the FeMo-cofactor of nitrogenase. Here we discuss briefly how metals are incorporated into porphyrins and corrins to form haem and other metallated tetrapyrroles, how Fe-S clusters are synthesized and how copper is inserted into superoxide dismutase. 

Figure 3.11 (a) and (b) the P-cluster of nitrogenase in its reduced and oxidized state and (c) the FeMo-cofactor. The molecules are represented with C green, N blue, O red, S yellow, Fe orange and Mo pink. (From Voet and Voet, 2004. Reproduced with permission from John Wiley Sons., Inc.)... 

It is still debated if the overall oxidation state of the FeMo cofactor in its resting state (or, without substrate binding) has to be described as... 

It is recalled that in Chapter 9, Section 2, the electrochemical behaviour of the FeMo cofactor from FeMo-nitrogenase, was reported. It possesses a heteronuclear iron-molybdenum-sulfur (MoFe7S9) cluster, which has similarities with the above discussed iron-sulfur proteins. 

Figure 3.28 The FeMo cofactor, M center, of nitrogenase s MoFe protein.

The P clusters of nitrogenase. The enzyme nitrogenase consists of two proteins the Fe protein (m.w. 55,000), which contains a single 4Fe-4S center, and the more complex MoFe protein (m.w. 220,000) (48,49). The minimum functional unit of the latter appears to be the half molecule, an asymmetric dimer containing 1 Mo, 14-16 Fe, and 16-18 sulfides. Application of a vast array of spectroscopic methods to the MoFe protein in a variety of oxidation states has led to the conclusion that it contains two types of metal-sulfur cluster in a 2 1 ratio unusual Fe S units termed P clusters, and the protein-bound form of the FeMo-cofactor (50). 

Synthetic efforts at preparing model complexes for the FeMo-cofactor have largely focussed on two types of Mo-Fe-S cluster, both of which are prepared via self-assembly reactions using tetrathiomolybdate as starting material. The first of these is the "linear" type of cluster, containing the MoS2Fe unit formed by coordination of discrete MoS - units to Fe. The second is the... 

One type of the constituent metallocenters in the MoFe protein has the properties of a somewhat independent structural entity. This component, referred to as the FeMo cofactor (FeMo-co), was first identified by Shah and Brill (1977) as the stable metallocluster extracted from acid-denatured MoFe protein. The FeMo-co was able to fully activate a defective protein in the extracts of mutant strain UW45, a protein which subsequently was shown to contain the P clusters but not the EPR-active center. The isolated cofactor accounted for the total S = t system observed by EPR and Mdssbauer spectroscopies of the holo-MoFe protein (Rawlings et al., 1978). Elemental analysis indicated a composition of Mo Fee-8 Se-g for the cofactor, which, if there are two FeMo-co s per a2 2> accounts for all the molybdenum and approximately half the iron in active enzyme (Nelson etai, 1983). Although FeMo-co has been extensively studied [reviewed in Burgess (1990)] the structure remains enigmatic. To date, all attempts to crystallize the cofactor have failed. This is possibly due to the instability and resultant heterogeneity of the cofactor when removed from the protein. Also, there is a paucity of appropriate models for spectral comparison (see Coucouvanis, 1991, for a recent discussion). Final resolution of this elusive structure may require its determination as a component of the holoprotein. 

More complex assemblies of iron and sulfur, sometimes extended to other metals like nickel, molybdenum, vanadium, or other iron centers are found in some enzymes, that catalyze the transformation of small molecules [1, 14]. Among these centers, we will focus next on the P cluster and the FeMo cofactor of nitrogenase and on the H cluster of the iron-only hydrogenase. 

The FeMo-cofactor structure can be viewed as the assembly of two incomplete... 

Fig.4 Structures of the FeMo cofactor of nitrogenase (Y is C, N, or O) and limiting stoichiometry of the catalyzed reaction.

The FeMo cofactor (or M center) in the MoFe-proteinis in the native paramagnetic M state. Reduction of the MoFe-protein by the Fe-protein results in the reduction of FeMo-co from the M state to the M state at a potential estimated to be less than —0.465 V (NHE). The electron paramagnetic resonance (EPR) silent M state is only transiently produced during catalysis, and relaxes to the M state when catalysis stops. The intimate consequences of the M state reduction are not precisely known. A more oxidized diamagnetic state may also be generated (M ) at —0.042 V but its biological relevance is unclear [9]. 

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