Tertiary protein structure results

Chemical immobilization methods may alter the local and net charges of enzymes, through covalent modification of charged residues such as lysine (NH4), aspartate, and glutamate (COO-). Conformational changes in secondary and tertiary protein structure may occur as a result of this covalent modification, or as a result of electrostatic, hydrogen-bonding or hydrophobic interactions with the support material. Finally, activity losses may occur as a result of the chemical transformation of catalytically essential amino acid residues. 

Approaches of de novo predictions, which try to calculate how the structural elements are folded into the 3D-stmcture (tertiary structure) of complete proteins are nowadays far away from reliable large-scale applications. On the other, hand this topic is under strong development indicated by recent successful results at the contest for structural prediction methods CASP4. With the fast growing number of experimentally solved 3D-stmctures of protein and new promising approaches like threading tools combined with experimental structural constraints, one can expect more reliable de novo predictions for 3D-protein structures in the future. 

The order of amino acids in protein molecules, and the resulting three-dimensional structures that form, provide an enormous variety of possibilities for protein structure. This is what makes life so diverse. Proteins have primary, secondary, tertiary, and quaternary structures. The structures of protein molecules determine the behavior of proteins in crucial areas such as the processes by which the body s immune system recognizes substances that are foreign to the body. Proteinaceous enzymes depend on their structures for the very specific functions of the enzymes. 

Proteins are often referred to as globular and fibrous proteins according to their conformation. Globular proteins are usually soluble in water, whilst fibrous proteins are usually insoluble. The complex nature of their structures has resulted in the use of a sub-classification, sometimes referred to as the order of protein structures. This classification divides the structure into into primary, secondary, tertiary and quaternary orders of structures. 

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